C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: gametogenetin binding protein 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020530 Ggnbp2 10090 - 11:84832361-84870817 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000018547 Ggnbp2-002 84832861-84870646 protein_coding
  ENSMUST00000100686 Ggnbp2-008 84832972-84870740 protein_coding
  ENSMUST00000108081 Ggnbp2-007 84832361-84870789 protein_coding
  ENSMUST00000132098 Ggnbp2-005 84834136-84836468 protein_coding
  ENSMUST00000134043 Ggnbp2-004 84852382-84858494 processed_transcript
  ENSMUST00000154915 Ggnbp2-003 84832806-84870202 protein_coding
  ENSMUST00000165459 Ggnbp2-010 84853970-84860659 retained_intron
  ENSMUST00000166425 Ggnbp2-009 84860719-84870491 protein_coding
  ENSMUST00000167429 Ggnbp2-006 84868880-84870779 processed_transcript
  ENSMUST00000168267 Ggnbp2-011 84836421-84837984 processed_transcript
  ENSMUST00000168434 Ggnbp2-001 84832361-84870817 protein_coding
  ENSMUST00000170741 Ggnbp2-012 84834512-84870725 protein_coding
  ENSMUST00000172405 Ggnbp2-201 84832361-84870738 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000018547ENSMUST00000100686ENSMUST00000108081ENSMUST00000154915ENSMUST00000166425ENSMUST00000167429ENSMUST00000168434ENSMUST00000170741ENSMUST00000172405
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000018547 N/A N/A N/A 10.957±0.00 N/A N/A N/A N/A N/A N/A 4.337±1.53 8.255±3.45 6.656±0.00 133.219±165.99
ENSMUST00000100686 5.031±0.25 N/A N/A N/A 5.566±1.94 2.881±0.00 N/A 2.846±0.00 N/A 2.575±0.00 N/A 5.582±0.43 21.768±0.00 17.785±3.62
ENSMUST00000108081 5.567±1.06 5.279±1.06 11.372±0.04 9.161±1.37 5.501±1.02 5.583±2.14 3.316±0.34 4.194±1.28 14.711±12.94 5.138±1.64 3.822±1.85 6.276±2.06 12.004±2.62 26.165±0.87
ENSMUST00000154915 7.230±0.00 6.767±1.15 12.478±1.38 14.834±9.89 5.420±0.00 5.005±1.68 2.874±0.56 4.542±1.30 19.239±18.53 6.438±1.15 N/A 14.433±16.20 32.587±23.37 25.195±0.00
ENSMUST00000166425 N/A N/A N/A N/A 12.734±0.00 11.088±1.12 10.399±0.00 14.879±2.18 12.826±1.55 16.458±2.13 N/A 13.168±3.22 N/A 85.858±0.89
ENSMUST00000167429 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.746±0.20 N/A N/A
ENSMUST00000168434 2.467±0.00 3.559±0.00 6.254±1.38 4.696±0.00 3.476±0.00 2.200±0.00 1.259±0.00 3.650±1.40 3.586±0.00 4.456±1.03 2.023±0.18 4.631±0.83 5.497±0.00 N/A
ENSMUST00000170741 N/A N/A N/A 76.172±0.00 N/A N/A N/A N/A N/A N/A N/A 93.589±0.00 120.683±2.41 N/A
ENSMUST00000172405 N/A N/A 7.188±0.00 9.818±4.06 8.488±0.00 N/A 2.640±0.41 1.698±0.00 8.088±1.56 N/A 1.597±0.52 11.723±0.24 8.966±3.60 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YB CIL_0007YB_0004 VISTA 11:84425827-85026602
CIL_00085R CIL_00085R_0002 VISTA 11:84466073-85066769

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0007275 IEA multicellular organismal development
GO:0007283 IEA spermatogenesis
GO:0008150 ND biological_process
GO:0030154 IEA cell differentiation
GO:0031410 IEA cytoplasmic vesicle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000055086 ggnbp2 gametogenetin binding protein 2 protein_coding Danio_rerio
ENSG00000278311 GGNBP2 gametogenetin binding protein 2 protein_coding Homo_sapiens

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