C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin-like, containing PHD and RING finger domains, 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000001228 Uhrf1 10090 + 17:56303321-56323486 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000001258 Uhrf1-001 56303321-56323486 protein_coding
  ENSMUST00000113035 Uhrf1-003 56304313-56323486 protein_coding
  ENSMUST00000113038 Uhrf1-002 56303400-56323486 protein_coding
  ENSMUST00000113039 Uhrf1-004 56304348-56323486 protein_coding
  ENSMUST00000137876 Uhrf1-006 56312663-56313176 retained_intron
  ENSMUST00000139654 Uhrf1-007 56318026-56322339 retained_intron
  ENSMUST00000142387 Uhrf1-005 56304407-56310719 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000001258ENSMUST00000113035ENSMUST00000113038ENSMUST00000113039ENSMUST00000139654ENSMUST00000142387
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000001258 2.950±2.51 0.459±0.00 1.276±0.00 3.934±1.23 1.245±0.61 3.407±1.29 0.195±0.04 0.260±0.09 31.605±17.05 0.739±0.32 0.073±0.00 5.253±2.65 7.866±1.17 N/A
ENSMUST00000113035 0.170±0.00 N/A N/A N/A N/A N/A N/A 0.215±0.00 0.097±0.06 N/A N/A N/A N/A 4.772±1.35
ENSMUST00000113038 0.972±0.55 0.852±0.25 0.410±0.07 3.320±0.45 1.344±0.79 3.339±0.51 N/A 0.321±0.20 7.846±6.32 0.759±0.00 0.083±0.05 6.197±2.33 10.324±6.91 N/A
ENSMUST00000113039 1.969±1.18 0.678±0.00 0.973±0.26 5.478±3.83 0.962±0.17 1.504±0.13 0.260±0.00 0.385±0.14 20.748±14.10 0.544±0.11 0.208±0.16 6.416±2.20 11.507±10.47 14.108±5.96
ENSMUST00000139654 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.095±0.01 N/A N/A N/A
ENSMUST00000142387 N/A N/A N/A N/A N/A N/A N/A N/A 0.072±0.00 N/A N/A 23.931±0.00 42.820±39.29 53.415±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00029M CIL_00029M_0002 CGP 17:56294113-56323486
CIL_0005GV CIL_0005GV_0003 CGP 17:56303321-56402870

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000790 IDA nuclear chromatin
GO:0000791 ISS euchromatin
GO:0000792 IDA heterochromatin
GO:0000987 IEA core promoter proximal region sequence-specific DNA binding
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005657 IDA replication fork
GO:0005720 IDA nuclear heterochromatin
GO:0006281 IEA DNA repair
GO:0006351 IEA transcription, DNA-templated
GO:0007049 IEA cell cycle
GO:0008270 ISS zinc ion binding
GO:0008283 TAS cell proliferation
GO:0008327 IEA methyl-CpG binding
GO:0010216 IMP maintenance of DNA methylation
GO:0010390 IDA histone monoubiquitination
GO:0016363 IDA nuclear matrix
GO:0016574 ISS histone ubiquitination
GO:0016874 IEA ligase activity
GO:0031493 IDA nucleosomal histone binding
GO:0032270 IEA positive regulation of cellular protein metabolic process
GO:0035064 IDA methylated histone binding
GO:0042393 ISS histone binding
GO:0042787 ISS protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:0042802 IPI identical protein binding
GO:0044729 IDA hemi-methylated DNA-binding
GO:0051865 ISS protein autoubiquitination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000009946 uhrf1 ubiquitin-like, containing PHD and RING finger domains, 1 protein_coding Danio_rerio
ENSDARG00000091448 uhrf1 ubiquitin-like, containing PHD and RING finger domains, 1 protein_coding Danio_rerio
ENSG00000276043 UHRF1 ubiquitin-like with PHD and ring finger domains 1 protein_coding Homo_sapiens

Loading