C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: staphylococcal nuclease and tudor domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000001460 Snd1-001 ENSMUSG00000001424 10090 + 6:28480348-28888832 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000001460
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000001460 33.038±8.88 72.672±16.73 25.640±1.38 22.082±6.64 30.831±10.13 27.658±9.41 11.186±3.31 16.896±2.23 33.682±2.46 29.863±4.34 9.615±0.54 63.430±17.27 62.807±19.01 3.438±0.49

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008LN CIL_0008LN_0002 VISTA 6:28095025-28698247
CIL_0001OG CIL_0001OG_0002 CGP 6:28442334-28935162
CIL_0004Y2 CIL_0004Y2_0003 CGP 6:28475139-28935162

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001649 IEA osteoblast differentiation
GO:0004518 IEA nuclease activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005739 IDA mitochondrion
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0016020 IEA membrane
GO:0016442 IEA RISC complex
GO:0031047 IEA gene silencing by RNA
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome
GO:0090305 IEA nucleic acid phosphodiester bond hydrolysis
GO:0097433 IDA dense body

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000354725 SND1-001 protein_coding Homo_sapiens 0 3849
ENST00000461056 SND1-002 processed_transcript Homo_sapiens 0 459
ENST00000463020 SND1-013 retained_intron Homo_sapiens 0 396
ENST00000465900 SND1-007 processed_transcript Homo_sapiens 0 734
ENST00000468166 SND1-006 processed_transcript Homo_sapiens 0 490
ENST00000468621 SND1-003 processed_transcript Homo_sapiens 0 540
ENST00000470463 SND1-010 processed_transcript Homo_sapiens 0 457
ENST00000470723 SND1-009 processed_transcript Homo_sapiens 0 289
ENST00000483503 SND1-004 processed_transcript Homo_sapiens 0 632
ENST00000485871 SND1-012 processed_transcript Homo_sapiens 0 278
ENST00000486037 SND1-016 protein_coding Homo_sapiens 0 553
ENST00000489417 SND1-011 retained_intron Homo_sapiens 0 699
ENST00000492772 SND1-005 processed_transcript Homo_sapiens 0 664

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