C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sarcoglycan, alpha (dystrophin-associated glycoprotein)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000001508 Sgca 10090 - 11:94962791-94976327 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000100551 Sgca-201 94962822-94973463 protein_coding
  ENSMUST00000103162 Sgca-001 94962791-94976327 protein_coding
  ENSMUST00000139855 Sgca-003 94962797-94970676 protein_coding
  ENSMUST00000152042 Sgca-002 94972226-94973489 protein_coding
  ENSMUST00000166320 Sgca-202 94963208-94976327 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000100551ENSMUST00000103162ENSMUST00000139855ENSMUST00000152042ENSMUST00000166320
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000100551 1.957±1.15 0.264±0.11 16.109±2.54 0.087±0.03 29.548±21.74 3.464±0.36 101.402±16.86 0.944±0.38 0.132±0.11 4.589±1.85 92.710±5.94 1.832±0.64 1.026±0.00 6.347±3.36
ENSMUST00000103162 N/A 0.151±0.00 N/A N/A 2.910±0.00 N/A N/A N/A N/A N/A 16.817±2.30 0.156±0.07 N/A N/A
ENSMUST00000139855 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.253±0.18 0.144±0.00 6.180±3.41
ENSMUST00000152042 N/A N/A 28.468±5.90 0.286±0.00 89.701±89.68 13.949±3.83 410.770±108.55 4.760±2.59 N/A 10.838±2.23 N/A 6.215±3.71 0.300±0.00 N/A
ENSMUST00000166320 N/A 0.158±0.05 N/A 0.031±0.00 0.246±0.16 0.705±0.00 N/A N/A 0.028±0.02 N/A N/A 0.904±0.63 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00088W CIL_00088W_0002 VISTA 11:94580928-95183811

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005887 TAS integral component of plasma membrane
GO:0005911 IDA cell-cell junction
GO:0006936 IEA muscle contraction
GO:0007517 IEA muscle organ development
GO:0016011 IDA dystroglycan complex
GO:0016012 IEA sarcoglycan complex
GO:0042383 IDA sarcolemma
GO:0045121 IDA membrane raft
GO:0061024 TAS membrane organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074156 sgca sarcoglycan, alpha protein_coding Danio_rerio
ENSG00000108823 SGCA sarcoglycan, alpha (50kDa dystrophin-associated glycoprotein) protein_coding Homo_sapiens

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