C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sarcoglycan, alpha (dystrophin-associated glycoprotein)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000100551 Sgca-201 ENSMUSG00000001508 10090 - 11:94962822-94973463 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000100551
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000100551 1.957±1.15 0.264±0.11 16.109±2.54 0.087±0.03 29.548±21.74 3.464±0.36 101.402±16.86 0.944±0.38 0.132±0.11 4.589±1.85 92.710±5.94 1.832±0.64 1.026±0.00 6.347±3.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00088W CIL_00088W_0002 VISTA 11:94580928-95183811

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005887 TAS integral component of plasma membrane
GO:0005911 IDA cell-cell junction
GO:0006936 IEA muscle contraction
GO:0007517 IEA muscle organ development
GO:0016011 IDA dystroglycan complex
GO:0016012 IEA sarcoglycan complex
GO:0042383 IDA sarcolemma
GO:0045121 IDA membrane raft
GO:0061024 TAS membrane organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262018 SGCA-001 protein_coding Homo_sapiens 0 1157
ENST00000502555 SGCA-004 nonsense_mediated_decay Homo_sapiens 0 521
ENST00000513821 SGCA-003 nonsense_mediated_decay Homo_sapiens 0 784

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