C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sarcoglycan, alpha (50kDa dystrophin-associated glycoprotein)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000108823 SGCA 9606 + 17:50164214-50175931 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000262018 SGCA-001 50166005-50175931 protein_coding
  ENST00000344627 SGCA-002 50166005-50175928 protein_coding
  ENST00000502555 SGCA-004 50166009-50169979 nonsense_mediated_decay
  ENST00000504073 SGCA-011 50168522-50175914 protein_coding
  ENST00000505964 SGCA-012 50175173-50175928 retained_intron
  ENST00000508382 SGCA-013 50172405-50175900 processed_transcript
  ENST00000511303 SGCA-008 50166045-50175928 protein_coding
  ENST00000512526 SGCA-010 50167581-50175387 nonsense_mediated_decay
  ENST00000513821 SGCA-003 50166004-50175797 nonsense_mediated_decay
  ENST00000513942 SGCA-005 50164214-50175850 processed_transcript
  ENST00000514934 SGCA-006 50165985-50168570 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000262018ENST00000344627ENST00000502555ENST00000504073ENST00000505964ENST00000508382ENST00000512526ENST00000513821ENST00000513942
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000262018 1.314±0.00 6.612±0.00 0.145±0.00 2.498±1.25 9.778±9.51 12.594±9.08 0.556±0.00 1.188±1.02 18.368±0.00 97.851±72.16 1.684±1.09 1.925±1.12 7.469±0.00
ENST00000344627 0.954±0.00 3.496±0.00 N/A 1.185±0.00 N/A 7.802±5.63 0.477±0.00 1.204±0.00 N/A 6.296±0.00 1.146±0.41 1.522±0.86 6.140±0.00
ENST00000502555 N/A N/A N/A N/A 0.167±0.00 1.244±0.00 N/A 1.259±0.00 N/A 6.101±0.00 0.048±0.00 N/A 1.735±0.00
ENST00000504073 N/A N/A N/A 2.186±0.00 N/A N/A 0.521±0.00 N/A N/A N/A N/A N/A N/A
ENST00000505964 N/A N/A N/A N/A 1.263±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508382 N/A N/A N/A N/A N/A N/A N/A 0.704±0.00 N/A N/A N/A N/A N/A
ENST00000512526 N/A 4.301±0.00 N/A N/A 17.816±0.00 N/A N/A 0.247±0.00 N/A N/A N/A N/A N/A
ENST00000513821 N/A N/A N/A 1.880±0.00 N/A N/A N/A N/A 1.420±0.00 93.328±0.00 2.033±0.00 1.387±0.68 N/A
ENST00000513942 N/A N/A 0.183±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00088W CIL_00088W_0001 VISTA 17:49956976-50560219
CIL_0004X4 CIL_0004X4_0002 CGP 17:50164214-50201632

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005911 IEA cell-cell junction
GO:0006936 IEA muscle contraction
GO:0007517 IEA muscle organ development
GO:0016010 TAS dystrophin-associated glycoprotein complex
GO:0016011 IEA dystroglycan complex
GO:0016012 IEA sarcoglycan complex
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0042383 IEA sarcolemma
GO:0045121 IEA membrane raft

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074156 sgca sarcoglycan, alpha protein_coding Danio_rerio
ENSMUSG00000001508 Sgca sarcoglycan, alpha (dystrophin-associated glycoprotein) protein_coding Mus_musculus

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