C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: homeobox C8
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000001657 Hoxc8 10090 + 15:102990607-102994111 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000001703 Hoxc8-001 102990607-102993821 protein_coding
  ENSMUST00000189484 Hoxc8-002 102991889-102994111 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000001703ENSMUST00000189484
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000001703 11.249±7.05 10.458±2.65 0.137±0.07 0.010±0.00 9.468±3.59 0.073±0.05 1.598±0.35 0.052±0.07 0.027±0.01 0.232±0.08 5.395±1.20 1.069±1.19 0.137±0.05
ENSMUST00000189484 N/A N/A 0.058±0.03 N/A N/A N/A 0.366±0.11 0.028±0.00 N/A 0.154±0.06 2.914±0.65 0.253±0.36 0.037±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B4 CIL_0009B4_0002 VISTA 15:102394217-102994945
CIL_0007SU CIL_0007SU_0002 VISTA 15:102699781-103302958
CIL_00084M CIL_00084M_0002 VISTA 15:102713812-103314964
CIL_0002TN CIL_0002TN_0003 CGP 15:102976439-102994111
CIL_00049I CIL_00049I_0002 CGP 15:102990607-103011881

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IDA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0009952 IGI anterior/posterior pattern specification
GO:0015630 IEA microtubule cytoskeleton
GO:0030182 IMP neuron differentiation
GO:0043565 IEA sequence-specific DNA binding
GO:0048705 IGI skeletal system morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070346 hoxc8a homeo box C8a protein_coding Danio_rerio
ENSG00000037965 HOXC8 homeobox C8 protein_coding Homo_sapiens

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