C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: homeobox C6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000001661 Hoxc6 10090 + 15:102998257-103011881 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000001711 Hoxc6-001 103009573-103011881 protein_coding
  ENSMUST00000173210 Hoxc6-002 102998257-103010768 processed_transcript
  ENSMUST00000173421 Hoxc6-003 103000529-103010006 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000001711ENSMUST00000173210ENSMUST00000173421
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000001711 12.804±5.98 21.416±2.53 0.712±0.15 0.128±0.08 8.820±0.93 0.122±0.03 0.033±0.00 8.587±0.87 0.092±0.05 0.124±0.09 1.887±0.45 11.306±5.90 1.408±1.15 0.438±0.06
ENSMUST00000173210 N/A N/A N/A N/A N/A 0.086±0.00 N/A 2.917±0.25 0.018±0.00 N/A N/A 5.209±0.00 0.182±0.04 N/A
ENSMUST00000173421 N/A N/A N/A N/A N/A 0.125±0.00 N/A N/A N/A N/A N/A N/A 1.665±0.00 0.361±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SU CIL_0007SU_0002 VISTA 15:102699781-103302958
CIL_00084M CIL_00084M_0002 VISTA 15:102713812-103314964
CIL_00049I CIL_00049I_0002 CGP 15:102990607-103011881

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0009952 IGI anterior/posterior pattern specification
GO:0043565 IEA sequence-specific DNA binding
GO:0048706 IGI embryonic skeletal system development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000046045 hoxc6b homeo box C6b protein_coding Danio_rerio
ENSDARG00000070343 hoxc6a homeo box C6a protein_coding Danio_rerio
ENSG00000197757 HOXC6 homeobox C6 protein_coding Homo_sapiens

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