C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox C6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000173210 Hoxc6-002 ENSMUSG00000001661 10090 + 15:102998257-103010768 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonKidneyLiverOvaryPlacentaENSMUST00000173210
Transcript ID Colon Kidney Liver Ovary Placenta
ENSMUST00000173210 0.086±0.00 2.917±0.25 0.018±0.00 5.209±0.00 0.182±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SU CIL_0007SU_0002 VISTA 15:102699781-103302958
CIL_00084M CIL_00084M_0002 VISTA 15:102713812-103314964
CIL_00049I CIL_00049I_0002 CGP 15:102990607-103011881

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000243108 HOXC6-001 protein_coding Homo_sapiens 0 686
ENST00000394331 HOXC6-002 protein_coding Homo_sapiens 0 1186
ENST00000504315 HOXC6-003 protein_coding Homo_sapiens 0 627
ENST00000509328 HOXC6-004 protein_coding Homo_sapiens 0 422

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