C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox C6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000001711 Hoxc6-001 ENSMUSG00000001661 10090 + 15:103009573-103011881 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000001711
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000001711 12.804±5.98 21.416±2.53 0.712±0.15 0.128±0.08 8.820±0.93 0.122±0.03 0.033±0.00 8.587±0.87 0.092±0.05 0.124±0.09 1.887±0.45 11.306±5.90 1.408±1.15 0.438±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SU CIL_0007SU_0002 VISTA 15:102699781-103302958
CIL_00084M CIL_00084M_0002 VISTA 15:102713812-103314964
CIL_00049I CIL_00049I_0002 CGP 15:102990607-103011881

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0009952 IGI anterior/posterior pattern specification
GO:0043565 IEA sequence-specific DNA binding
GO:0048706 IGI embryonic skeletal system development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000222728 HOXA6-001 protein_coding Homo_sapiens 0 215
ENST00000242159 HOXA7-001 protein_coding Homo_sapiens 0 193
ENST00000243108 HOXC6-001 protein_coding Homo_sapiens 0 2130
ENST00000394331 HOXC6-002 protein_coding Homo_sapiens 0 1853
ENST00000504315 HOXC6-003 protein_coding Homo_sapiens 0 628
ENST00000509328 HOXC6-004 protein_coding Homo_sapiens 0 422
ENST00000521478 HOXA6-002 processed_transcript Homo_sapiens 0 215
ENST00000523796 HOXA7-003 processed_transcript Homo_sapiens 0 193

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