C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: family with sequence similarity 50, member A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000138242 Fam50a-002 ENSMUSG00000001962 10090 + X:74313126-74320134 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastKidneyLiverLungMuscleOvaryTestisENSMUST00000138242
Transcript ID Adipose Bladder Brain Breast Kidney Liver Lung Muscle Ovary Testis
ENSMUST00000138242 1.052±0.00 1.926±0.00 1.535±0.45 1.150±0.17 0.751±0.08 0.550±0.00 0.812±0.19 0.975±0.14 1.983±0.62 0.131±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003LB CIL_0003LB_0002 CGP X:74304998-74320149
CIL_0006K8 CIL_0006K8_0002 CGP X:74313033-74344689

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000158526 FAM50A-002 protein_coding Homo_sapiens 0 577
ENST00000393600 FAM50A-001 protein_coding Homo_sapiens 0 577
ENST00000464419 FAM50A-005 retained_intron Homo_sapiens 0 593
ENST00000478509 FAM50A-004 retained_intron Homo_sapiens 0 448
ENST00000481619 FAM50A-007 retained_intron Homo_sapiens 0 424
ENST00000615670 SGK223-001 protein_coding Homo_sapiens 0.0003 53
ENST00000622241 SGK223-201 protein_coding Homo_sapiens 0.0003 53

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