C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: importin 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000002319 Ipo4 10090 - 14:55625400-55637895 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000047131 Ipo4-001 55625400-55635684 protein_coding
  ENSMUST00000125133 Ipo4-004 55634048-55635569 retained_intron
  ENSMUST00000126064 Ipo4-008 55627298-55627924 retained_intron
  ENSMUST00000127773 Ipo4-007 55628783-55630660 retained_intron
  ENSMUST00000135221 Ipo4-002 55625740-55635957 nonsense_mediated_decay
  ENSMUST00000141499 Ipo4-010 55625724-55627390 retained_intron
  ENSMUST00000141848 Ipo4-011 55625716-55626432 retained_intron
  ENSMUST00000146528 Ipo4-012 55625722-55626417 processed_transcript
  ENSMUST00000148351 Ipo4-003 55625634-55635631 nonsense_mediated_decay
  ENSMUST00000148942 Ipo4-005 55633757-55635210 retained_intron
  ENSMUST00000150951 Ipo4-006 55632928-55633658 retained_intron
  ENSMUST00000155464 Ipo4-009 55625719-55627563 processed_transcript
  ENSMUST00000156420 Ipo4-013 55625896-55637895 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000047131ENSMUST00000125133ENSMUST00000127773ENSMUST00000135221ENSMUST00000148351ENSMUST00000156420
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000047131 35.815±8.99 37.214±7.01 14.921±2.02 18.885±3.49 22.886±3.46 19.820±1.48 10.196±2.30 15.335±2.95 10.934±1.87 16.743±0.85 9.076±2.22 45.577±11.49 24.289±5.73 145.805±10.90
ENSMUST00000125133 N/A 101.993±0.95 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000127773 N/A N/A N/A 37.909±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 82.304±0.00
ENSMUST00000135221 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.303±0.00 N/A N/A N/A
ENSMUST00000148351 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.017±0.34 12.247±1.32 11.695±0.00 N/A
ENSMUST00000156420 N/A N/A N/A N/A 7.381±0.98 N/A 3.981±0.00 5.673±0.03 4.184±0.00 N/A N/A 17.495±3.95 7.690±0.00 8.274±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00028R CIL_00028R_0002 CGP 14:55618037-55637895

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000790 IEA nuclear chromatin
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006335 IEA DNA replication-dependent nucleosome assembly
GO:0006336 IEA DNA replication-independent nucleosome assembly
GO:0006610 ISA ribosomal protein import into nucleus
GO:0008536 IEA Ran GTPase binding
GO:0016020 IEA membrane
GO:0042254 ISA ribosome biogenesis
GO:0043234 IEA protein complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000041493 ipo4 importin 4 protein_coding Danio_rerio
ENSG00000196497 IPO4 importin 4 protein_coding Homo_sapiens

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