C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: importin 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000047131 Ipo4-001 ENSMUSG00000002319 10090 - 14:55625400-55635684 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000047131
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000047131 35.815±8.99 37.214±7.01 14.921±2.02 18.885±3.49 22.886±3.46 19.820±1.48 10.196±2.30 15.335±2.95 10.934±1.87 16.743±0.85 9.076±2.22 45.577±11.49 24.289±5.73 145.805±10.90

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00028R CIL_00028R_0002 CGP 14:55618037-55637895

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IEA nuclear chromatin
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0006335 IEA DNA replication-dependent nucleosome assembly
GO:0006336 IEA DNA replication-independent nucleosome assembly
GO:0006610 ISA ribosomal protein import into nucleus
GO:0008536 IEA Ran GTPase binding
GO:0016020 IEA membrane
GO:0042254 ISA ribosome biogenesis
GO:0043234 IEA protein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000354464 IPO4-001 protein_coding Homo_sapiens 0 2955
ENST00000558046 IPO4-009 nonsense_mediated_decay Homo_sapiens 0 2811
ENST00000558193 IPO4-021 retained_intron Homo_sapiens 3.00004e-41 172
ENST00000558718 IPO4-016 retained_intron Homo_sapiens 0 326
ENST00000558780 IPO4-004 nonsense_mediated_decay Homo_sapiens 0 2806
ENST00000559253 IPO4-018 nonsense_mediated_decay Homo_sapiens 2.00386e-43 180
ENST00000559588 IPO4-002 retained_intron Homo_sapiens 0 2868
ENST00000559635 IPO4-017 retained_intron Homo_sapiens 5.00264e-43 178
ENST00000560155 IPO4-003 nonsense_mediated_decay Homo_sapiens 0 2880
ENST00000560798 IPO4-011 retained_intron Homo_sapiens 0 2796
ENST00000561090 IPO4-010 retained_intron Homo_sapiens 0 2844
ENST00000561199 IPO4-008 retained_intron Homo_sapiens 0 1310
ENST00000561419 RP11-468E2.2-001 nonsense_mediated_decay Homo_sapiens 0 2955

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