C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: single-stranded DNA binding protein 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000003992 Ssbp2 10090 + 13:91460283-91703429 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000004094 Ssbp2-001 91461050-91703429 protein_coding
  ENSMUST00000042122 Ssbp2-004 91461091-91701236 protein_coding
  ENSMUST00000133984 Ssbp2-006 91539343-91657776 processed_transcript
  ENSMUST00000137493 Ssbp2-003 91461160-91672408 retained_intron
  ENSMUST00000137658 Ssbp2-009 91670437-91691432 retained_intron
  ENSMUST00000138488 Ssbp2-007 91461127-91539399 nonsense_mediated_decay
  ENSMUST00000141381 Ssbp2-005 91461181-91524866 retained_intron
  ENSMUST00000144659 Ssbp2-002 91461163-91565210 retained_intron
  ENSMUST00000156547 Ssbp2-008 91460283-91688866 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000004094ENSMUST00000042122ENSMUST00000133984ENSMUST00000156547
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000004094 N/A N/A N/A 2.762±0.00 N/A N/A N/A N/A N/A N/A 0.442±0.08 N/A N/A N/A
ENSMUST00000042122 9.548±3.45 1.742±0.23 32.967±0.16 39.233±8.18 7.497±4.48 3.160±0.60 6.754±0.74 9.670±0.40 18.144±6.83 5.948±0.64 5.373±0.67 10.653±3.81 3.180±1.29 2.815±0.31
ENSMUST00000133984 N/A N/A N/A 36.846±0.00 N/A N/A N/A N/A N/A N/A N/A 20.949±0.00 6.751±5.10 11.209±11.45
ENSMUST00000156547 9.864±5.02 5.124±1.07 22.897±1.14 20.295±6.90 7.822±0.45 6.054±0.96 N/A N/A 15.800±3.57 5.947±0.76 3.225±0.46 15.124±2.02 N/A 2.755±0.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000922 CIL_000922_0002 VISTA 13:90886994-91490170

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003697 IEA single-stranded DNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015991 SSBP2 (1 of 2) single-stranded DNA binding protein 2 protein_coding Danio_rerio
ENSDARG00000057395 SSBP2 (2 of 2) single-stranded DNA binding protein 2 protein_coding Danio_rerio
ENSG00000145687 SSBP2 single-stranded DNA binding protein 2 protein_coding Homo_sapiens

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