C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: single-stranded DNA binding protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000042122 Ssbp2-004 ENSMUSG00000003992 10090 + 13:91461091-91701236 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000042122
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000042122 9.548±3.45 1.742±0.23 32.967±0.16 39.233±8.18 7.497±4.48 3.160±0.60 6.754±0.74 9.670±0.40 18.144±6.83 5.948±0.64 5.373±0.67 10.653±3.81 3.180±1.29 2.815±0.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000922 CIL_000922_0002 VISTA 13:90886994-91490170

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003697 IEA single-stranded DNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000320672 SSBP2-001 protein_coding Homo_sapiens 0 1796
ENST00000401636 RP3-492P14.2-001 processed_pseudogene Homo_sapiens 0 693
ENST00000504136 SSBP2-015 retained_intron Homo_sapiens 0 560
ENST00000504174 SSBP2-010 processed_transcript Homo_sapiens 0 368
ENST00000504985 SSBP2-008 protein_coding Homo_sapiens 0 1685
ENST00000505980 SSBP2-007 protein_coding Homo_sapiens 0 1598
ENST00000506960 SSBP2-014 retained_intron Homo_sapiens 0 433
ENST00000507472 SSBP2-017 processed_transcript Homo_sapiens 0 449
ENST00000507655 SSBP2-012 processed_transcript Homo_sapiens 0 671
ENST00000507968 SSBP2-018 processed_transcript Homo_sapiens 3e-21 106
ENST00000508912 SSBP2-016 retained_intron Homo_sapiens 0 283
ENST00000509013 SSBP2-013 protein_coding Homo_sapiens 0 448
ENST00000509053 SSBP2-006 protein_coding Homo_sapiens 0 1413
ENST00000509743 SSBP2-019 processed_transcript Homo_sapiens 0 776
ENST00000510060 SSBP2-021 processed_transcript Homo_sapiens 0 1158
ENST00000512098 SSBP2-011 processed_transcript Homo_sapiens 0 344
ENST00000512923 SSBP2-009 protein_coding Homo_sapiens 0 1679
ENST00000513785 SSBP2-020 retained_intron Homo_sapiens 0 499
ENST00000514493 SSBP2-003 protein_coding Homo_sapiens 0 2427
ENST00000515395 SSBP2-004 protein_coding Homo_sapiens 0 1888
ENST00000615665 SSBP2-201 protein_coding Homo_sapiens 0 1685
ENST00000622130 SSBP2-202 protein_coding Homo_sapiens 0 1796

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