C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: phosphodiesterase 1C
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000004347 Pde1c 10090 - 6:56069821-56369634 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000044505 Pde1c-201 56069821-56362392 protein_coding
  ENSMUST00000114327 Pde1c-202 56079988-56362519 protein_coding
  ENSMUST00000164037 Pde1c-203 56100446-56362392 protein_coding
  ENSMUST00000164752 Pde1c-204 56100446-56362810 protein_coding
  ENSMUST00000166102 Pde1c-205 56100446-56362392 protein_coding
  ENSMUST00000166890 Pde1c-206 56100446-56369634 protein_coding
  ENSMUST00000168944 Pde1c-207 56079988-56369634 protein_coding
  ENSMUST00000170774 Pde1c-208 56079988-56369634 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000044505ENSMUST00000114327ENSMUST00000164037ENSMUST00000164752ENSMUST00000166102ENSMUST00000166890ENSMUST00000168944ENSMUST00000170774
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000044505 0.015±0.00 0.024±0.00 N/A 0.842±0.06 0.067±0.02 0.181±0.10 1.924±0.42 0.187±0.00 0.037±0.02 0.065±0.01 0.058±0.02 0.064±0.04 0.031±0.01 N/A
ENSMUST00000114327 N/A N/A N/A N/A N/A 0.066±0.00 N/A N/A N/A N/A N/A N/A 0.028±0.00 N/A
ENSMUST00000164037 N/A N/A N/A N/A 0.034±0.00 0.046±0.00 N/A 0.058±0.01 N/A 0.028±0.00 N/A N/A N/A N/A
ENSMUST00000164752 N/A N/A N/A N/A 0.027±0.00 0.083±0.00 N/A 0.149±0.00 N/A N/A 0.022±0.00 0.040±0.00 0.009±0.00 N/A
ENSMUST00000166102 N/A N/A N/A 0.491±0.00 0.039±0.00 0.036±0.01 1.465±0.94 0.133±0.09 0.030±0.00 0.032±0.00 N/A N/A N/A N/A
ENSMUST00000166890 0.022±0.01 N/A 0.003±0.00 0.693±0.05 0.056±0.03 0.103±0.02 2.229±0.97 0.142±0.00 0.050±0.04 0.045±0.01 0.039±0.01 0.051±0.02 0.013±0.01 4.794±2.26
ENSMUST00000168944 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.009±0.00 N/A
ENSMUST00000170774 0.012±0.00 0.062±0.03 0.006±0.00 N/A 0.040±0.00 0.080±0.04 N/A N/A N/A 0.050±0.00 N/A 0.044±0.01 0.053±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000358 CIL_000358_0002 CGP 6:56017515-56369634
CIL_000359 CIL_000359_0002 CGP 6:56069821-56704692

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004117 ISO calmodulin-dependent cyclic-nucleotide phosphodiesterase activity
GO:0005516 IEA calmodulin binding
GO:0005929 IDA cilium
GO:0007165 IEA signal transduction
GO:0007608 IGI sensory perception of smell
GO:0008152 IEA metabolic process
GO:0046872 IEA metal ion binding
GO:0048101 ISO calcium- and calmodulin-regulated 3',5'-cyclic-GMP phosphodiesterase activity
GO:0051592 ISO response to calcium ion

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012490 PDE1C (1 of 2) phosphodiesterase 1C, calmodulin-dependent 70kDa protein_coding Danio_rerio
ENSDARG00000067683 PDE1C (2 of 2) phosphodiesterase 1C, calmodulin-dependent 70kDa protein_coding Danio_rerio
ENSG00000154678 PDE1C phosphodiesterase 1C, calmodulin-dependent 70kDa protein_coding Homo_sapiens

Loading