C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphodiesterase 1C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000166890 Pde1c-206 ENSMUSG00000004347 10090 - 6:56100446-56369634 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000166890
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000166890 0.022±0.01 0.003±0.00 0.693±0.05 0.056±0.03 0.103±0.02 2.229±0.97 0.142±0.00 0.050±0.04 0.045±0.01 0.039±0.01 0.051±0.02 0.013±0.01 4.794±2.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000358 CIL_000358_0002 CGP 6:56017515-56369634
CIL_000359 CIL_000359_0002 CGP 6:56069821-56704692

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004117 ISO calmodulin-dependent cyclic-nucleotide phosphodiesterase activity
GO:0005929 IDA cilium
GO:0007165 IEA signal transduction
GO:0007608 IGI sensory perception of smell
GO:0008152 IEA metabolic process
GO:0046872 IEA metal ion binding
GO:0048101 ISO calcium- and calmodulin-regulated 3',5'-cyclic-GMP phosphodiesterase activity
GO:0051592 ISO response to calcium ion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000067655 PDE1C (1 of 2)-201 protein_coding Danio_rerio 0 682
ENST00000321453 PDE1C-002 protein_coding Homo_sapiens 0 2134
ENST00000396182 PDE1C-007 protein_coding Homo_sapiens 0 2161
ENST00000396184 PDE1C-003 protein_coding Homo_sapiens 0 2211
ENST00000396191 PDE1C-006 protein_coding Homo_sapiens 0 2134
ENST00000396193 PDE1C-001 protein_coding Homo_sapiens 0 2087
ENST00000464881 PDE1C-011 processed_transcript Homo_sapiens 0 571
ENST00000479980 PDE1C-010 processed_transcript Homo_sapiens 0 344
ENST00000482681 PDE1C-008 retained_intron Homo_sapiens 0 577

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