C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000359_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000154678-ENSG00000106355 CGP 9606 7:31751179-32495283
GeneTranscriptPositionBiotype
ENSG00000106355 (LSM5)
LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) 		ENST00000223084 (LSM5-002) 32487035-32490863 nonsense_mediated_decay
ENST00000409292 (LSM5-005) 32487029-32490100 protein_coding
ENST00000409782 (LSM5-009) 32487040-32490380 protein_coding
ENST00000409909 (LSM5-007) 32486805-32495283 protein_coding
ENST00000409952 (LSM5-008) 32487063-32495249 protein_coding
ENST00000409987 (LSM5-010) 32487035-32490380 protein_coding
ENST00000410044 (LSM5-004) 32487035-32490361 protein_coding
ENST00000450169 (LSM5-001) 32485332-32490418 protein_coding
ENST00000468872 (LSM5-006) 32487035-32488061 retained_intron
ENST00000480956 (LSM5-003) 32487065-32490371 retained_intron
ENSG00000154678 (PDE1C)
phosphodiesterase 1C, calmodulin-dependent 70kDa 		ENST00000321453 (PDE1C-002) 31753076-32071436 protein_coding
ENST00000396182 (PDE1C-007) 31790200-32070862 protein_coding
ENST00000396184 (PDE1C-003) 31783504-32071408 protein_coding
ENST00000396189 (PDE1C-004) 31880849-32071433 protein_coding
ENST00000396191 (PDE1C-006) 31753018-32070849 protein_coding
ENST00000396193 (PDE1C-001) 31751179-32299329 protein_coding
ENST00000464881 (PDE1C-011) 31873332-32078010 processed_transcript
ENST00000478736 (PDE1C-009) 31847864-31850902 retained_intron
ENST00000479980 (PDE1C-010) 31790171-31820919 processed_transcript
ENST00000482681 (PDE1C-008) 31865017-31879284 retained_intron
ENST00000495221 (PDE1C-005) 32070484-32071371 processed_transcript
ENSG00000226421 (SLC25A5P5)
solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 pseudogene 5 		ENST00000435239 (SLC25A5P5-001) 32471513-32472409 processed_pseudogene
ENSG00000226468 (AC018641.7)
 ENST00000435950 (AC018641.7-001) 32456963-32457758 processed_pseudogene
ENSG00000236460 (SNX2P2)
sorting nexin 2 pseudogene 2 		ENST00000424553 (SNX2P2-001) 31941261-31941583 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_000359_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000004347-ENSMUSG00000091625 CGP 10090 6:56069821-56704692
GeneTranscriptPositionBiotype
ENSMUSG00000004347 (Pde1c)
phosphodiesterase 1C 		ENSMUST00000044505 (Pde1c-201) 56069821-56362392 protein_coding
ENSMUST00000114327 (Pde1c-202) 56079988-56362519 protein_coding
ENSMUST00000164037 (Pde1c-203) 56100446-56362392 protein_coding
ENSMUST00000164752 (Pde1c-204) 56100446-56362810 protein_coding
ENSMUST00000166102 (Pde1c-205) 56100446-56362392 protein_coding
ENSMUST00000166890 (Pde1c-206) 56100446-56369634 protein_coding
ENSMUST00000168944 (Pde1c-207) 56079988-56369634 protein_coding
ENSMUST00000170774 (Pde1c-208) 56079988-56369634 protein_coding
ENSMUSG00000091625 (Lsm5)
LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) 		ENSMUST00000170382 (Lsm5-001) 56701063-56704692 protein_coding
ENSMUST00000175865 (Lsm5-004) 56701065-56704677 retained_intron
ENSMUST00000176595 (Lsm5-002) 56701246-56704683 processed_transcript
ENSMUST00000177144 (Lsm5-003) 56701123-56704656 nonsense_mediated_decay

Mus musculus Ensembl (GRCm38)

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Expression Patterns

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Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000359_0001ENSG00000106355ENST00000223084ENST00000409292ENST00000409782ENST00000409909ENST00000409952ENST00000409987ENST00000410044ENST00000450169ENST00000468872ENST00000480956ENSG00000154678ENST00000321453ENST00000396182ENST00000396184ENST00000396189ENST00000396191ENST00000396193ENST00000464881ENST00000478736ENST00000479980ENST00000482681ENST00000495221ENSG00000226421ENST00000435239ENSG00000226468ENST00000435950ENSG00000236460ENST00000424553CIL_000359_0002ENSMUSG00000004347ENSMUST00000044505ENSMUST00000114327ENSMUST00000164037ENSMUST00000164752ENSMUST00000166102ENSMUST00000166890ENSMUST00000168944ENSMUST00000170774ENSMUSG00000091625ENSMUST00000170382ENSMUST00000175865ENSMUST00000176595ENSMUST00000177144
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000359_0001ENSG00000106355ENST00000223084ENST00000409292ENST00000409782ENST00000409909ENST00000409952ENST00000409987ENST00000410044ENST00000450169ENST00000468872ENST00000480956ENSG00000154678ENST00000321453ENST00000396182ENST00000396184ENST00000396191ENST00000396193ENST00000479980ENSG00000226421ENST00000435239ENSG00000226468ENST00000435950ENSG00000236460ENST00000424553CIL_000359_0002ENSMUSG00000004347ENSMUST00000044505ENSMUST00000114327ENSMUST00000164037ENSMUST00000164752ENSMUST00000166102ENSMUST00000166890ENSMUST00000168944ENSMUST00000170774ENSMUSG00000091625ENSMUST00000170382ENSMUST00000175865ENSMUST00000176595
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000106355 ENST00000223084 N/A N/A 0.224±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000409292 3.147±0.00 9.990±0.00 N/A N/A 11.292±0.00 13.022±0.00 6.141±0.00 5.126±3.73 5.903±0.00 N/A 2.437±1.06 14.029±1.28 5.620±2.37 6.196±3.51
ENST00000409782 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.868±0.00
ENST00000409909 1.730±0.00 N/A 0.492±0.00 2.983±0.00 N/A 1.435±0.73 N/A 4.265±0.00 2.335±0.00 1.423±0.00 0.770±0.00 6.535±2.32 5.873±0.24 4.040±0.00
ENST00000409952 N/A N/A 0.807±0.00 N/A 4.475±0.00 N/A 1.346±0.00 N/A 2.872±0.00 2.483±0.00 N/A N/A N/A N/A
ENST00000409987 3.577±0.00 6.240±0.00 N/A 3.496±0.00 N/A 4.549±0.00 6.268±0.00 N/A 6.556±0.00 4.144±0.00 3.160±0.00 11.189±2.74 4.125±0.00 6.059±0.00
ENST00000410044 N/A N/A N/A 2.882±0.00 N/A 0.690±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000450169 1.433±0.00 3.387±0.00 N/A 2.548±0.13 1.370±1.08 0.877±0.15 1.730±0.41 1.757±0.67 1.018±0.28 1.068±0.33 1.081±0.00 3.630±0.99 1.714±0.61 1.372±0.16
ENST00000468872 N/A N/A N/A N/A 2.274±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480956 N/A N/A N/A N/A N/A 0.261±0.00 N/A N/A N/A 0.298±0.00 N/A 2.187±0.00 N/A 1.061±0.00
ENSG00000154678 ENST00000321453 N/A N/A 0.495±0.00 N/A N/A 0.575±0.00 N/A N/A N/A N/A N/A 0.186±0.00 N/A 0.464±0.00
ENST00000396182 N/A N/A 1.041±0.00 3.255±0.00 N/A N/A 12.455±0.00 N/A 4.810±0.00 2.010±0.00 0.019±0.00 0.790±0.00 N/A 2.352±0.82
ENST00000396184 0.110±0.00 0.425±0.00 N/A 0.831±0.00 0.241±0.00 0.353±0.00 6.711±0.00 0.005±0.00 N/A N/A N/A 0.269±0.00 0.129±0.00 0.453±0.00
ENST00000396189 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000396191 N/A N/A N/A N/A 1.351±0.00 N/A N/A N/A N/A N/A N/A N/A 0.100±0.00 N/A
ENST00000396193 N/A N/A 0.412±0.00 4.699±0.00 0.356±0.04 0.459±0.00 N/A 0.431±0.00 1.269±0.00 N/A 0.126±0.00 N/A 0.056±0.00 0.672±0.40
ENST00000464881 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478736 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479980 N/A N/A N/A N/A N/A N/A N/A N/A 0.045±0.00 N/A N/A N/A N/A N/A
ENST00000482681 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495221 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000226421 ENST00000435239 0.019±0.00 0.059±0.00 N/A 0.065±0.00 0.119±0.08 0.019±0.00 N/A 0.020±0.00 0.017±0.00 N/A N/A 0.148±0.06 0.228±0.08 0.114±0.07
ENSG00000226468 ENST00000435950 N/A N/A N/A 0.139±0.00 N/A N/A N/A N/A 0.713±0.00 N/A N/A 0.036±0.00 N/A 0.173±0.11
ENSG00000236460 ENST00000424553 N/A N/A 0.974±0.00 N/A N/A N/A N/A N/A 0.918±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000004347 ENSMUST00000044505 0.015±0.00 0.024±0.00 N/A 0.842±0.06 0.067±0.02 0.181±0.10 1.924±0.42 0.187±0.00 0.037±0.02 0.065±0.01 0.058±0.02 0.064±0.04 0.031±0.01 N/A
ENSMUST00000114327 N/A N/A N/A N/A N/A 0.066±0.00 N/A N/A N/A N/A N/A N/A 0.028±0.00 N/A
ENSMUST00000164037 N/A N/A N/A N/A 0.034±0.00 0.046±0.00 N/A 0.058±0.01 N/A 0.028±0.00 N/A N/A N/A N/A
ENSMUST00000164752 N/A N/A N/A N/A 0.027±0.00 0.083±0.00 N/A 0.149±0.00 N/A N/A 0.022±0.00 0.040±0.00 0.009±0.00 N/A
ENSMUST00000166102 N/A N/A N/A 0.491±0.00 0.039±0.00 0.036±0.01 1.465±0.94 0.133±0.09 0.030±0.00 0.032±0.00 N/A N/A N/A N/A
ENSMUST00000166890 0.022±0.01 N/A 0.003±0.00 0.693±0.05 0.056±0.03 0.103±0.02 2.229±0.97 0.142±0.00 0.050±0.04 0.045±0.01 0.039±0.01 0.051±0.02 0.013±0.01 4.794±2.26
ENSMUST00000168944 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.009±0.00 N/A
ENSMUST00000170774 0.012±0.00 0.062±0.03 0.006±0.00 N/A 0.040±0.00 0.080±0.04 N/A N/A N/A 0.050±0.00 N/A 0.044±0.01 0.053±0.00 N/A
ENSMUSG00000091625 ENSMUST00000170382 3.235±1.06 N/A 18.963±3.71 21.998±16.02 2.023±0.82 1.914±0.85 3.290±0.48 5.387±1.16 29.458±29.90 3.777±0.64 7.739±0.89 6.152±8.69 31.953±19.47 5.002±1.28
ENSMUST00000175865 N/A N/A N/A 0.103±0.00 0.473±0.21 0.512±0.18 N/A N/A N/A N/A N/A 0.959±0.53 0.683±0.20 0.243±0.21
ENSMUST00000176595 N/A N/A N/A N/A N/A 0.516±0.00 N/A N/A N/A N/A N/A 0.790±0.00 N/A N/A
ENSMUST00000177144 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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