C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphodiesterase 1C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000166102 Pde1c-205 ENSMUSG00000004347 10090 - 6:56100446-56362392 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartKidneyLiverLungENSMUST00000166102
Transcript ID Brain Breast Colon Heart Kidney Liver Lung
ENSMUST00000166102 0.491±0.00 0.039±0.00 0.036±0.01 1.465±0.94 0.133±0.09 0.030±0.00 0.032±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000358 CIL_000358_0002 CGP 6:56017515-56369634
CIL_000359 CIL_000359_0002 CGP 6:56069821-56704692

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004117 ISO calmodulin-dependent cyclic-nucleotide phosphodiesterase activity
GO:0005516 IEA calmodulin binding
GO:0005929 IDA cilium
GO:0007165 IEA signal transduction
GO:0007608 IGI sensory perception of smell
GO:0008152 IEA metabolic process
GO:0046872 IEA metal ion binding
GO:0048101 ISO calcium- and calmodulin-regulated 3',5'-cyclic-GMP phosphodiesterase activity
GO:0051592 ISO response to calcium ion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000067655 PDE1C (1 of 2)-201 protein_coding Danio_rerio 0 741
ENST00000321453 PDE1C-002 protein_coding Homo_sapiens 0 2296
ENST00000396182 PDE1C-007 protein_coding Homo_sapiens 0 2335
ENST00000396184 PDE1C-003 protein_coding Homo_sapiens 0 2372
ENST00000396189 PDE1C-004 protein_coding Homo_sapiens 0 241
ENST00000396191 PDE1C-006 protein_coding Homo_sapiens 0 2307
ENST00000396193 PDE1C-001 protein_coding Homo_sapiens 0 2087
ENST00000464881 PDE1C-011 processed_transcript Homo_sapiens 0 571
ENST00000479980 PDE1C-010 processed_transcript Homo_sapiens 0 344
ENST00000482681 PDE1C-008 retained_intron Homo_sapiens 0 577

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