C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DEAD (Asp-Glu-Ala-Asp) box polypeptide 56
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000004507 Ddx56-001 ENSMUSG00000004393 10090 - 11:6258919-6267772 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000004507
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000004507 18.852±0.21 14.693±0.83 14.532±2.88 17.149±6.24 13.224±1.66 7.976±1.24 7.445±1.50 12.868±0.96 17.216±8.58 10.414±1.51 9.077±0.72 13.616±2.96 18.937±10.32 11.927±5.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000J3 CIL_0000J3_0002 CGP 11:6211013-6267772
CIL_0000J4 CIL_0000J4_0002 CGP 11:6258919-6274870

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004386 IEA helicase activity
GO:0005524 IEA ATP binding
GO:0005730 IDA nucleolus
GO:0006364 IEA rRNA processing
GO:0008150 ND biological_process
GO:0016020 IEA membrane
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000258772 DDX56-001 protein_coding Homo_sapiens 0 1725
ENST00000415758 DDX56-004 nonsense_mediated_decay Homo_sapiens 0 830
ENST00000421223 DDX56-002 nonsense_mediated_decay Homo_sapiens 0 1288
ENST00000431640 DDX56-003 protein_coding Homo_sapiens 0 1044
ENST00000433257 DDX56-008 nonsense_mediated_decay Homo_sapiens 0 1489
ENST00000446987 DDX56-007 nonsense_mediated_decay Homo_sapiens 0 1668
ENST00000448192 DDX56-011 protein_coding Homo_sapiens 0 359
ENST00000467318 DDX56-006 processed_transcript Homo_sapiens 0 1522
ENST00000479440 DDX56-009 retained_intron Homo_sapiens 0 488
ENST00000485367 DDX56-005 processed_transcript Homo_sapiens 0 1655

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