C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Rho guanine nucleotide exchange factor (GEF) 40
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000004562 Arhgef40 10090 + 14:51984719-52006251 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000093813 Arhgef40-001 51984838-52006251 protein_coding
  ENSMUST00000100639 Arhgef40-005 51984864-52005622 protein_coding
  ENSMUST00000182019 Arhgef40-015 51991758-51994177 retained_intron
  ENSMUST00000182061 Arhgef40-006 51984931-52005623 protein_coding
  ENSMUST00000182193 Arhgef40-012 51984971-51988768 protein_coding
  ENSMUST00000182217 Arhgef40-021 52002433-52005626 protein_coding
  ENSMUST00000182338 Arhgef40-013 51984915-51989116 nonsense_mediated_decay
  ENSMUST00000182412 Arhgef40-017 51994174-51997162 nonsense_mediated_decay
  ENSMUST00000182480 Arhgef40-016 51991634-51993893 processed_transcript
  ENSMUST00000182504 Arhgef40-026 52004589-52005312 retained_intron
  ENSMUST00000182609 Arhgef40-014 51984912-51986072 retained_intron
  ENSMUST00000182644 Arhgef40-010 51997753-52005629 retained_intron
  ENSMUST00000182649 Arhgef40-011 51984719-51987467 nonsense_mediated_decay
  ENSMUST00000182667 Arhgef40-024 52002358-52005623 protein_coding
  ENSMUST00000182740 Arhgef40-002 51984844-51990655 retained_intron
  ENSMUST00000182760 Arhgef40-007 51984910-52005623 protein_coding
  ENSMUST00000182777 Arhgef40-023 52004502-52005313 retained_intron
  ENSMUST00000182828 Arhgef40-025 52004082-52005541 protein_coding
  ENSMUST00000182905 Arhgef40-004 51984833-52005655 nonsense_mediated_decay
  ENSMUST00000182909 Arhgef40-003 51984909-52005627 protein_coding
  ENSMUST00000182931 Arhgef40-020 52003571-52005021 retained_intron
  ENSMUST00000182961 Arhgef40-009 51984966-51991646 retained_intron
  ENSMUST00000183022 Arhgef40-019 52002386-52003963 retained_intron
  ENSMUST00000183167 Arhgef40-018 51995352-51996350 retained_intron
  ENSMUST00000183208 Arhgef40-008 51984886-52005633 nonsense_mediated_decay
  ENSMUST00000183213 Arhgef40-022 52004488-52005371 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000093813ENSMUST00000100639ENSMUST00000182061ENSMUST00000182644ENSMUST00000182909
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000093813 6.624±0.77 9.253±1.14 N/A N/A 7.028±0.00 7.582±0.59 N/A 3.109±0.00 1.298±0.19 5.826±1.70 N/A 10.499±2.62 N/A
ENSMUST00000100639 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.265±0.00 N/A N/A
ENSMUST00000182061 N/A N/A N/A 7.756±0.00 4.057±0.00 N/A 1.750±0.00 N/A N/A N/A N/A 16.932±0.00 2.429±0.85
ENSMUST00000182644 N/A N/A N/A 16.171±0.00 N/A N/A N/A N/A N/A N/A N/A 42.091±0.00 8.141±2.31
ENSMUST00000182909 10.809±2.80 N/A 7.720±1.80 N/A 7.264±1.04 7.770±0.00 3.538±0.67 3.445±0.28 2.967±1.48 4.917±0.22 1.720±0.20 9.340±1.94 2.478±1.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004Z0 CIL_0004Z0_0003 CGP 14:51984719-52020733

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0005575 ND cellular_component
GO:0005737 IEA cytoplasm
GO:0008150 ND biological_process
GO:0032321 IEA positive regulation of Rho GTPase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078979 ARHGEF40 Rho guanine nucleotide exchange factor (GEF) 40 protein_coding Danio_rerio
ENSG00000165801 ARHGEF40 Rho guanine nucleotide exchange factor (GEF) 40 protein_coding Homo_sapiens

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