C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho guanine nucleotide exchange factor (GEF) 40
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000093813 Arhgef40-001 ENSMUSG00000004562 10090 + 14:51984838-52006251 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLiverLungOvaryENSMUST00000093813
Transcript ID Adipose Adrenal Breast Colon Kidney Liver Lung Ovary
ENSMUST00000093813 6.624±0.77 9.253±1.14 7.028±0.00 7.582±0.59 3.109±0.00 1.298±0.19 5.826±1.70 10.499±2.62

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004Z0 CIL_0004Z0_0003 CGP 14:51984719-52020733

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0005575 ND cellular_component
GO:0005737 IEA cytoplasm
GO:0008150 ND biological_process
GO:0032321 IEA positive regulation of Rho GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000298694 ARHGEF40-001 protein_coding Homo_sapiens 0 4704
ENST00000360947 ZNF219-001 protein_coding Homo_sapiens 0 289
ENST00000421093 ZNF219-003 protein_coding Homo_sapiens 0 252
ENST00000451119 ZNF219-002 protein_coding Homo_sapiens 0 255
ENST00000553709 ARHGEF40-003 nonsense_mediated_decay Homo_sapiens 0 4566
ENST00000554514 ARHGEF40-006 retained_intron Homo_sapiens 0 1901
ENST00000555038 ARHGEF40-004 protein_coding Homo_sapiens 0 1478
ENST00000555052 ARHGEF40-008 retained_intron Homo_sapiens 0 320
ENST00000555232 ARHGEF40-005 retained_intron Homo_sapiens 0 1618
ENST00000556399 ARHGEF40-002 nonsense_mediated_decay Homo_sapiens 0 2782
ENST00000557498 ARHGEF40-009 retained_intron Homo_sapiens 0 233

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