C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho guanine nucleotide exchange factor (GEF) 40
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000182909 Arhgef40-003 ENSMUSG00000004562 10090 + 14:51984909-52005627 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000182909
Transcript ID Adipose Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000182909 10.809±2.80 7.720±1.80 7.264±1.04 7.770±0.00 3.538±0.67 3.445±0.28 2.967±1.48 4.917±0.22 1.720±0.20 9.340±1.94 2.478±1.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004Z0 CIL_0004Z0_0003 CGP 14:51984719-52020733

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0005575 ND cellular_component
GO:0005737 IEA cytoplasm
GO:0008150 ND biological_process
GO:0032321 IEA positive regulation of Rho GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000298694 ARHGEF40-001 protein_coding Homo_sapiens 0 4796
ENST00000553709 ARHGEF40-003 nonsense_mediated_decay Homo_sapiens 0 4676
ENST00000554514 ARHGEF40-006 retained_intron Homo_sapiens 0 1901
ENST00000555038 ARHGEF40-004 protein_coding Homo_sapiens 0 1458
ENST00000555052 ARHGEF40-008 retained_intron Homo_sapiens 0 320
ENST00000555232 ARHGEF40-005 retained_intron Homo_sapiens 0 1618
ENST00000556399 ARHGEF40-002 nonsense_mediated_decay Homo_sapiens 0 2782
ENST00000557498 ARHGEF40-009 retained_intron Homo_sapiens 0 344

Loading