C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: N-myc downstream regulated gene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000005256 Ndrg1-001 ENSMUSG00000005125 10090 - 15:66929321-66969640 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000005256
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000005256 8.598±4.88 8.689±5.40 21.621±1.66 6.281±4.37 5.381±0.82 9.232±0.00 11.361±0.26 238.069±124.61 25.150±32.35 1.710±0.00 4.836±1.91 9.686±4.19 77.375±56.08 0.674±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009D4 CIL_0009D4_0002 VISTA 15:66524301-67127162
CIL_00094T CIL_00094T_0002 VISTA 15:66842033-67443636
CIL_0006FT CIL_0006FT_0003 CGP 15:66891320-66969640
CIL_0004PW CIL_0004PW_0002 CGP 15:66929321-67113992

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0005813 IEA centrosome
GO:0005874 IEA microtubule
GO:0005886 IEA plasma membrane
GO:0005913 IEA cell-cell adherens junction
GO:0008017 IEA microtubule binding
GO:0015630 IEA microtubule cytoskeleton
GO:0017137 IEA Rab GTPase binding
GO:0030330 IEA DNA damage response, signal transduction by p53 class mediator
GO:0032287 IMP peripheral nervous system myelin maintenance
GO:0043015 IEA gamma-tubulin binding
GO:0045296 IEA cadherin binding
GO:0045576 IDA mast cell activation
GO:0048471 IEA perinuclear region of cytoplasm
GO:0055038 IEA recycling endosome membrane
GO:0070062 IEA extracellular vesicular exosome
GO:0071456 IEA cellular response to hypoxia
GO:0090232 IEA positive regulation of spindle checkpoint

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000323851 NDRG1-002 protein_coding Homo_sapiens 0 1304
ENST00000414097 NDRG1-001 protein_coding Homo_sapiens 0 1304
ENST00000517331 NDRG1-023 processed_transcript Homo_sapiens 0 588
ENST00000517599 NDRG1-005 nonsense_mediated_decay Homo_sapiens 0 1077
ENST00000517745 NDRG1-024 retained_intron Homo_sapiens 0 276
ENST00000518010 NDRG1-025 processed_transcript Homo_sapiens 0 451
ENST00000518066 NDRG1-030 protein_coding Homo_sapiens 0 331
ENST00000518094 NDRG1-022 retained_intron Homo_sapiens 0 228
ENST00000518176 NDRG1-003 protein_coding Homo_sapiens 0 440
ENST00000518480 NDRG1-017 protein_coding Homo_sapiens 0 470
ENST00000519228 NDRG1-012 protein_coding Homo_sapiens 0 536
ENST00000519278 NDRG1-006 retained_intron Homo_sapiens 0 717
ENST00000519580 NDRG1-014 protein_coding Homo_sapiens 0 531
ENST00000520230 NDRG1-010 protein_coding Homo_sapiens 0 584
ENST00000520943 NDRG1-011 protein_coding Homo_sapiens 0 501
ENST00000521026 NDRG1-008 retained_intron Homo_sapiens 0 385
ENST00000521414 NDRG1-007 processed_transcript Homo_sapiens 0 562
ENST00000521438 NDRG1-009 retained_intron Homo_sapiens 6e-19 100
ENST00000521544 NDRG1-016 protein_coding Homo_sapiens 0 457
ENST00000522377 NDRG1-026 nonsense_mediated_decay Homo_sapiens 0 592
ENST00000522476 NDRG1-004 protein_coding Homo_sapiens 0 1194
ENST00000522890 NDRG1-013 protein_coding Homo_sapiens 0 531
ENST00000537882 NDRG1-201 protein_coding Homo_sapiens 0 1077

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