C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: N-myc downstream regulated gene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000168979 Ndrg1-003 ENSMUSG00000005125 10090 - 15:66943079-66967925 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastHeartENSMUST00000168979
Transcript ID Adrenal Breast Heart
ENSMUST00000168979 19.842±4.28 30.017±9.27 12.603±2.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009D4 CIL_0009D4_0002 VISTA 15:66524301-67127162
CIL_00094T CIL_00094T_0002 VISTA 15:66842033-67443636
CIL_0006FT CIL_0006FT_0003 CGP 15:66891320-66969640
CIL_0004PW CIL_0004PW_0002 CGP 15:66929321-67113992

Gene Ontology

GO IDEvidence TypeGO Description
GO:0045576 IDA mast cell activation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000323851 NDRG1-002 protein_coding Homo_sapiens 0 577
ENST00000414097 NDRG1-001 protein_coding Homo_sapiens 0 577
ENST00000517331 NDRG1-023 processed_transcript Homo_sapiens 0 226
ENST00000517599 NDRG1-005 nonsense_mediated_decay Homo_sapiens 0 350
ENST00000517745 NDRG1-024 retained_intron Homo_sapiens 0 276
ENST00000518010 NDRG1-025 processed_transcript Homo_sapiens 0 451
ENST00000518094 NDRG1-022 retained_intron Homo_sapiens 0 228
ENST00000518480 NDRG1-017 protein_coding Homo_sapiens 0 470
ENST00000519228 NDRG1-012 protein_coding Homo_sapiens 0 536
ENST00000519580 NDRG1-014 protein_coding Homo_sapiens 0 531
ENST00000520230 NDRG1-010 protein_coding Homo_sapiens 0 577
ENST00000520943 NDRG1-011 protein_coding Homo_sapiens 0 501
ENST00000521544 NDRG1-016 protein_coding Homo_sapiens 0 457
ENST00000522377 NDRG1-026 nonsense_mediated_decay Homo_sapiens 0 577
ENST00000522476 NDRG1-004 protein_coding Homo_sapiens 0 466
ENST00000522890 NDRG1-013 protein_coding Homo_sapiens 0 531
ENST00000537882 NDRG1-201 protein_coding Homo_sapiens 0 350

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