C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: platelet-activating factor acetylhydrolase, isoform 1b, subunit 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000005447 Pafah1b3 10090 - 7:25295049-25297986 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000005583 Pafah1b3-001 25295049-25297986 protein_coding
  ENSMUST00000108410 Pafah1b3-007 25295049-25297312 protein_coding
  ENSMUST00000140093 Pafah1b3-008 25295049-25296702 retained_intron
  ENSMUST00000148150 Pafah1b3-005 25295359-25297882 protein_coding
  ENSMUST00000148828 Pafah1b3-004 25296620-25297921 retained_intron
  ENSMUST00000149634 Pafah1b3-003 25296874-25297934 processed_transcript
  ENSMUST00000155118 Pafah1b3-002 25295966-25297937 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000005583ENSMUST00000108410ENSMUST00000140093ENSMUST00000148150ENSMUST00000148828ENSMUST00000155118
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000005583 12.253±10.42 9.059±2.29 17.974±1.31 91.615±59.25 8.421±1.97 50.629±3.95 1.930±0.74 12.311±1.37 10.914±10.28 15.592±1.04 0.360±0.34 28.446±12.41 25.943±11.97 14.220±1.78
ENSMUST00000108410 1.739±0.33 5.423±2.18 N/A 70.891±43.85 9.700±2.27 49.878±8.13 1.160±0.57 9.714±1.93 3.489±1.61 5.983±0.33 0.212±0.12 34.705±4.64 17.582±7.46 5.476±0.05
ENSMUST00000140093 N/A 2.343±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.146±0.05 N/A N/A N/A
ENSMUST00000148150 2.598±2.00 3.206±1.11 6.053±0.00 45.124±27.83 3.342±1.05 12.831±1.37 0.454±0.00 N/A 4.212±0.77 3.602±0.75 0.196±0.08 11.743±4.66 9.816±2.40 4.523±0.95
ENSMUST00000148828 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.051±0.01 N/A N/A N/A
ENSMUST00000155118 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.062±0.00 N/A 8.414±0.77 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005V7 CIL_0005V7_0002 CGP 7:25267704-25297986
CIL_0005V8 CIL_0005V8_0002 CGP 7:25295049-25304133

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003847 IEA 1-alkyl-2-acetylglycerophosphocholine esterase activity
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005829 IEA cytosol
GO:0007283 IGI spermatogenesis
GO:0007420 IEA brain development
GO:0008152 IEA metabolic process
GO:0016020 IEA membrane
GO:0016042 IEA lipid catabolic process
GO:0016787 IEA hydrolase activity
GO:0046982 IEA protein heterodimerization activity
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058047 pafah1b3 platelet-activating factor acetylhydrolase, isoform Ib, gamma subunit protein_coding Danio_rerio
ENSG00000079462 PAFAH1B3 platelet-activating factor acetylhydrolase 1b, catalytic subunit 3 (29kDa) protein_coding Homo_sapiens

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