C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: platelet-activating factor acetylhydrolase, isoform 1b, subunit 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000155118 Pafah1b3-002 ENSMUSG00000005447 10090 - 7:25295966-25297937 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; MusclePlacentaENSMUST00000155118
Transcript ID Muscle Placenta
ENSMUST00000155118 0.062±0.00 8.414±0.77

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005V7 CIL_0005V7_0002 CGP 7:25267704-25297986
CIL_0005V8 CIL_0005V8_0002 CGP 7:25295049-25304133

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IDA cytoplasm
GO:0007283 IGI spermatogenesis
GO:0008152 IEA metabolic process
GO:0016787 IEA hydrolase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262890 PAFAH1B3-001 protein_coding Homo_sapiens 0 525
ENST00000538771 PAFAH1B3-201 protein_coding Homo_sapiens 0 527
ENST00000594989 PAFAH1B3-007 protein_coding Homo_sapiens 0 438
ENST00000595530 PAFAH1B3-004 protein_coding Homo_sapiens 0 531
ENST00000596265 PAFAH1B3-006 protein_coding Homo_sapiens 0 492
ENST00000597333 PAFAH1B3-005 retained_intron Homo_sapiens 0 385
ENST00000599778 PAFAH1B3-002 protein_coding Homo_sapiens 0 385
ENST00000601865 PAFAH1B3-003 protein_coding Homo_sapiens 0 394

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