C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: platelet-activating factor acetylhydrolase, isoform 1b, subunit 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000005583 Pafah1b3-001 ENSMUSG00000005447 10090 - 7:25295049-25297986 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000005583
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000005583 12.253±10.42 9.059±2.29 17.974±1.31 91.615±59.25 8.421±1.97 50.629±3.95 1.930±0.74 12.311±1.37 10.914±10.28 15.592±1.04 0.360±0.34 28.446±12.41 25.943±11.97 14.220±1.78

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005V7 CIL_0005V7_0002 CGP 7:25267704-25297986
CIL_0005V8 CIL_0005V8_0002 CGP 7:25295049-25304133

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003847 IEA 1-alkyl-2-acetylglycerophosphocholine esterase activity
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005829 IEA cytosol
GO:0007283 IGI spermatogenesis
GO:0007420 IEA brain development
GO:0008152 IEA metabolic process
GO:0016020 IEA membrane
GO:0016042 IEA lipid catabolic process
GO:0016787 IEA hydrolase activity
GO:0046982 IEA protein heterodimerization activity
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262890 PAFAH1B3-001 protein_coding Homo_sapiens 0 854
ENST00000538771 PAFAH1B3-201 protein_coding Homo_sapiens 0 856
ENST00000594989 PAFAH1B3-007 protein_coding Homo_sapiens 0 438
ENST00000595530 PAFAH1B3-004 protein_coding Homo_sapiens 0 643
ENST00000596265 PAFAH1B3-006 protein_coding Homo_sapiens 0 492
ENST00000597333 PAFAH1B3-005 retained_intron Homo_sapiens 0 385
ENST00000599778 PAFAH1B3-002 protein_coding Homo_sapiens 0 385
ENST00000601865 PAFAH1B3-003 protein_coding Homo_sapiens 0 394

Loading