C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: proteasome (prosome, macropain) 26S subunit, non-ATPase, 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000005625 Psmd4 10090 - 3:95032694-95042614 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000071664 Psmd4-001 95032697-95042552 protein_coding
  ENSMUST00000107237 Psmd4-002 95032694-95042614 protein_coding
  ENSMUST00000117355 Psmd4-004 95032705-95042543 protein_coding
  ENSMUST00000136868 Psmd4-005 95032923-95042545 retained_intron
  ENSMUST00000140280 Psmd4-003 95032705-95042548 retained_intron
  ENSMUST00000140348 Psmd4-008 95032704-95035267 protein_coding
  ENSMUST00000143688 Psmd4-007 95035823-95042550 processed_transcript
  ENSMUST00000147960 Psmd4-006 95032928-95033916 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000071664ENSMUST00000107237ENSMUST00000117355ENSMUST00000140348
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000071664 36.329±8.50 14.446±2.98 36.603±5.45 32.422±3.61 20.704±7.60 21.288±1.07 19.218±3.87 26.326±2.15 39.986±13.42 16.260±5.24 45.180±4.72 43.579±8.90 52.621±17.28 29.670±2.53
ENSMUST00000107237 60.909±7.86 46.704±6.37 40.391±0.00 62.212±7.75 42.877±9.20 38.014±6.34 27.363±7.48 37.114±4.27 52.182±19.00 38.970±2.17 38.715±4.30 65.821±13.56 86.320±25.02 79.033±3.50
ENSMUST00000117355 N/A 10.036±1.12 N/A N/A 6.403±0.00 N/A N/A N/A N/A 7.149±0.81 N/A 10.916±0.00 N/A N/A
ENSMUST00000140348 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 56.292±0.00 104.096±35.68 230.519±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000502 IEA proteasome complex
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0008540 IEA proteasome regulatory particle, base subcomplex
GO:0022624 IDA proteasome accessory complex
GO:0042802 IEA identical protein binding
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000023279 psmd4b proteasome (prosome, macropain) 26S subunit, non-ATPase, 4b protein_coding Danio_rerio
ENSDARG00000036715 psmd4a proteasome (prosome, macropain) 26S subunit, non-ATPase, 4a protein_coding Danio_rerio
ENSG00000159352 PSMD4 proteasome (prosome, macropain) 26S subunit, non-ATPase, 4 protein_coding Homo_sapiens

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