C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: proteasome (prosome, macropain) 26S subunit, non-ATPase, 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107237 Psmd4-002 ENSMUSG00000005625 10090 - 3:95032694-95042614 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000107237
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000107237 60.909±7.86 46.704±6.37 40.391±0.00 62.212±7.75 42.877±9.20 38.014±6.34 27.363±7.48 37.114±4.27 52.182±19.00 38.970±2.17 38.715±4.30 65.821±13.56 86.320±25.02 79.033±3.50

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0008540 IEA proteasome regulatory particle, base subcomplex
GO:0022624 IDA proteasome accessory complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000368881 PSMD4-002 protein_coding Homo_sapiens 0 1515
ENST00000368884 PSMD4-001 protein_coding Homo_sapiens 0 1561
ENST00000433951 PSMD4P1-001 processed_pseudogene Homo_sapiens 0 1044
ENST00000437736 PSMD4-014 protein_coding Homo_sapiens 0 857
ENST00000445776 PSMD4-008 protein_coding Homo_sapiens 0 619
ENST00000462970 PSMD4-004 retained_intron Homo_sapiens 0 361
ENST00000476855 PSMD4-006 retained_intron Homo_sapiens 0 1046
ENST00000480546 PIPSL-002 processed_transcript Homo_sapiens 0 1369
ENST00000489875 PIPSL-001 transcribed_processed_pseudogene Homo_sapiens 0 1336
ENST00000491857 PSMD4-009 retained_intron Homo_sapiens 0 418

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