C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: proteasome (prosome, macropain) 26S subunit, non-ATPase, 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000071664 Psmd4-001 ENSMUSG00000005625 10090 - 3:95032697-95042552 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000071664
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000071664 36.329±8.50 14.446±2.98 36.603±5.45 32.422±3.61 20.704±7.60 21.288±1.07 19.218±3.87 26.326±2.15 39.986±13.42 16.260±5.24 45.180±4.72 43.579±8.90 52.621±17.28 29.670±2.53

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000502 IEA proteasome complex
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0008540 IEA proteasome regulatory particle, base subcomplex
GO:0022624 IDA proteasome accessory complex
GO:0042802 IEA identical protein binding
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000368881 PSMD4-002 protein_coding Homo_sapiens 0 1544
ENST00000368884 PSMD4-001 protein_coding Homo_sapiens 0 1487
ENST00000433951 PSMD4P1-001 processed_pseudogene Homo_sapiens 0 1007
ENST00000437736 PSMD4-014 protein_coding Homo_sapiens 0 857
ENST00000445776 PSMD4-008 protein_coding Homo_sapiens 0 579
ENST00000462970 PSMD4-004 retained_intron Homo_sapiens 0 361
ENST00000476855 PSMD4-006 retained_intron Homo_sapiens 0 1062
ENST00000480546 PIPSL-002 processed_transcript Homo_sapiens 0 1328
ENST00000489875 PIPSL-001 transcribed_processed_pseudogene Homo_sapiens 0 1295
ENST00000491857 PSMD4-009 retained_intron Homo_sapiens 0 418

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