C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SH2 domain containing 1A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000005696 Sh2d1a 10090 + X:42502453-42529330 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000005839 Sh2d1a-001 42502562-42522093 protein_coding
  ENSMUST00000101619 Sh2d1a-007 42526585-42529330 retained_intron
  ENSMUST00000115070 Sh2d1a-002 42502654-42522093 protein_coding
  ENSMUST00000128393 Sh2d1a-005 42514313-42521970 processed_transcript
  ENSMUST00000129855 Sh2d1a-003 42502453-42523697 processed_transcript
  ENSMUST00000153948 Sh2d1a-004 42502760-42521872 protein_coding
  ENSMUST00000189753 Sh2d1a-006 42502497-42529326 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000005839ENSMUST00000115070ENSMUST00000128393ENSMUST00000129855ENSMUST00000153948ENSMUST00000189753
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000005839 0.045±0.00 N/A 0.135±0.02 0.984±0.43 0.099±0.00 0.302±0.00 0.279±0.14 0.037±0.02 0.435±0.07 0.145±0.00 0.241±0.04 0.062±0.00 N/A
ENSMUST00000115070 N/A N/A N/A N/A N/A N/A 0.055±0.00 0.083±0.00 N/A N/A 0.047±0.00 N/A 0.097±0.00
ENSMUST00000128393 N/A N/A 0.059±0.00 N/A N/A N/A 0.177±0.00 N/A N/A N/A N/A 0.075±0.00 0.195±0.04
ENSMUST00000129855 N/A N/A N/A N/A N/A 0.019±0.00 N/A 0.003±0.00 N/A 0.014±0.00 0.018±0.01 N/A N/A
ENSMUST00000153948 N/A N/A N/A N/A N/A N/A N/A 0.121±0.01 N/A N/A N/A 0.196±0.06 N/A
ENSMUST00000189753 N/A 0.191±0.11 N/A 0.991±0.33 N/A 0.096±0.00 0.100±0.00 0.132±0.08 0.317±0.07 N/A 0.257±0.16 0.018±0.00 0.078±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YQ CIL_0007YQ_0002 VISTA X:42042580-42644283
CIL_0000AX CIL_0000AX_0002 CGP X:42149317-42529330
CIL_0000AW CIL_0000AW_0002 CGP X:42502453-43429126

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005070 IEA SH3/SH2 adaptor activity
GO:0005515 IPI protein binding
GO:0006959 IMP humoral immune response
GO:0006968 IEA cellular defense response
GO:0009967 IEA positive regulation of signal transduction
GO:0045954 IMP positive regulation of natural killer cell mediated cytotoxicity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074854 sh2d1ab SH2 domain containing 1A duplicate b protein_coding Danio_rerio
ENSG00000183918 SH2D1A SH2 domain containing 1A protein_coding Homo_sapiens

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