C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SH2 domain containing 1A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000183918 SH2D1A 9606 + X:124346344-124373155 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000360027 SH2D1A-006 124346525-124371488 protein_coding
  ENST00000371139 SH2D1A-002 124346344-124373155 protein_coding
  ENST00000477673 SH2D1A-005 124346589-124371488 protein_coding
  ENST00000491950 SH2D1A-003 124346589-124371488 processed_transcript
  ENST00000494073 SH2D1A-004 124346589-124371488 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000360027ENST00000371139ENST00000494073
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000360027 N/A N/A 0.066±0.00 2.354±0.00 1.290±0.00 0.056±0.00 0.126±0.00 0.195±0.00 2.115±0.00 N/A N/A N/A 0.087±0.00
ENST00000371139 0.639±0.00 0.062±0.00 0.053±0.03 N/A N/A 0.021±0.00 N/A 0.134±0.00 1.043±0.30 0.035±0.00 0.118±0.01 0.086±0.01 0.175±0.00
ENST00000494073 N/A N/A N/A N/A N/A 0.048±0.00 N/A N/A N/A N/A N/A 0.269±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000GB CIL_0000GB_0002 CGP X:123859724-124422664
CIL_0007YQ CIL_0007YQ_0001 VISTA X:123916977-124518737
CIL_0000AX CIL_0000AX_0001 CGP X:123960212-124422664
CIL_0000AW CIL_0000AW_0001 CGP X:124346344-124963817

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005070 NAS:IEA SH3/SH2 adaptor activity
GO:0005515 IPI protein binding
GO:0005737 IDA:IEA cytoplasm
GO:0006959 IEA humoral immune response
GO:0006968 NAS:IEA cellular defense response
GO:0007267 IDA:IEA cell-cell signaling
GO:0009967 IEA positive regulation of signal transduction
GO:0045954 IEA positive regulation of natural killer cell mediated cytotoxicity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074854 sh2d1ab SH2 domain containing 1A duplicate b protein_coding Danio_rerio
ENSMUSG00000005696 Sh2d1a SH2 domain containing 1A protein_coding Mus_musculus

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