C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SH2 domain containing 1A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000189753 Sh2d1a-006 ENSMUSG00000005696 10090 + X:42502497-42529326 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000189753
Transcript ID Adrenal Breast Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000189753 0.191±0.11 0.991±0.33 0.096±0.00 0.100±0.00 0.132±0.08 0.317±0.07 0.257±0.16 0.018±0.00 0.078±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YQ CIL_0007YQ_0002 VISTA X:42042580-42644283
CIL_0000AX CIL_0000AX_0002 CGP X:42149317-42529330
CIL_0000AW CIL_0000AW_0002 CGP X:42502453-43429126

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005070 IEA SH3/SH2 adaptor activity
GO:0005515 IPI protein binding
GO:0006959 IMP humoral immune response
GO:0006968 IEA cellular defense response
GO:0009967 IEA positive regulation of signal transduction
GO:0045954 IMP positive regulation of natural killer cell mediated cytotoxicity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000360027 SH2D1A-006 protein_coding Homo_sapiens 0 405
ENST00000371139 SH2D1A-002 protein_coding Homo_sapiens 0 431
ENST00000477673 SH2D1A-005 protein_coding Homo_sapiens 1e-24 117

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