C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chordin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000006958 Chrd 10090 + 16:20733127-20742384 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000007171 Chrd-001 20733127-20742384 protein_coding
  ENSMUST00000115423 Chrd-002 20733127-20738152 protein_coding
  ENSMUST00000151150 Chrd-004 20736206-20742382 retained_intron
  ENSMUST00000153299 Chrd-003 20733127-20742384 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000007171ENSMUST00000115423ENSMUST00000151150ENSMUST00000153299
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000007171 6.527±1.87 14.666±2.78 7.425±0.46 5.207±2.46 4.532±1.29 3.699±0.53 0.504±0.20 2.623±0.79 2.181±1.47 1.537±0.28 1.291±0.26 3.705±1.84 0.894±0.25 0.428±0.17
ENSMUST00000115423 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.361±0.00
ENSMUST00000151150 N/A N/A N/A 1.142±0.25 0.289±0.00 N/A N/A N/A N/A N/A N/A N/A 0.118±0.00 0.061±0.05
ENSMUST00000153299 1.613±0.00 3.089±0.81 1.844±0.00 1.616±0.16 N/A 0.789±0.06 0.261±0.11 N/A N/A N/A 0.560±0.00 0.862±0.00 N/A 0.139±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00056Y CIL_00056Y_0002 CGP 16:20717665-20734511
CIL_00056V CIL_00056V_0002 CGP 16:20725158-20742384

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001501 IMP skeletal system development
GO:0001649 IDA osteoblast differentiation
GO:0001702 IMP gastrulation with mouth forming second
GO:0001707 IMP mesoderm formation
GO:0002053 IEA positive regulation of mesenchymal cell proliferation
GO:0005615 IDA extracellular space
GO:0007389 IMP pattern specification process
GO:0007417 IMP central nervous system development
GO:0008201 IDA heparin binding
GO:0009953 IMP dorsal/ventral pattern formation
GO:0021919 IEA BMP signaling pathway involved in spinal cord dorsal/ventral patterning
GO:0030336 IEA negative regulation of cell migration
GO:0030514 IDA negative regulation of BMP signaling pathway
GO:0030900 IMP forebrain development
GO:0045545 IDA syndecan binding
GO:0045668 IDA negative regulation of osteoblast differentiation
GO:0045785 IEA positive regulation of cell adhesion

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006110 chd chordin protein_coding Danio_rerio
ENSG00000090539 CHRD chordin protein_coding Homo_sapiens

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