C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: chordin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000151150 Chrd-004 ENSMUSG00000006958 10090 + 16:20736206-20742382 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastPlacentaTestisENSMUST00000151150
Transcript ID Brain Breast Placenta Testis
ENSMUST00000151150 1.142±0.25 0.289±0.00 0.118±0.00 0.061±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00056Y CIL_00056Y_0002 CGP 16:20717665-20734511
CIL_00056V CIL_00056V_0002 CGP 16:20725158-20742384

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000204604 CHRD-001 protein_coding Homo_sapiens 0 462
ENST00000348986 CHRD-013 protein_coding Homo_sapiens 0 462
ENST00000420973 CHRD-004 nonsense_mediated_decay Homo_sapiens 0 462
ENST00000448472 CHRD-002 nonsense_mediated_decay Homo_sapiens 0 462
ENST00000450923 CHRD-014 protein_coding Homo_sapiens 0 462
ENST00000460627 CHRD-005 retained_intron Homo_sapiens 0 462
ENST00000464833 CHRD-015 retained_intron Homo_sapiens 0 279
ENST00000470150 CHRD-016 retained_intron Homo_sapiens 0 460

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