C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: signal peptide, CUB domain, EGF-like 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000007279 Scube2 10090 - 7:109798676-109865679 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000007423 Scube2-004 109798676-109865586 protein_coding
  ENSMUST00000106728 Scube2-003 109798838-109865643 protein_coding
  ENSMUST00000106729 Scube2-001 109798690-109865679 protein_coding
  ENSMUST00000132113 Scube2-002 109799094-109840927 processed_transcript
  ENSMUST00000138946 Scube2-005 109800650-109808231 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000007423ENSMUST00000106728ENSMUST00000106729ENSMUST00000132113ENSMUST00000138946
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000007423 0.037±0.00 0.059±0.00 N/A 0.018±0.00 N/A 0.079±0.02 N/A N/A 0.347±0.00 N/A N/A 0.316±0.00
ENSMUST00000106728 0.014±0.00 N/A N/A 0.061±0.03 N/A 0.103±0.00 N/A 3.734±0.57 0.069±0.00 0.738±0.50 0.235±0.00 N/A
ENSMUST00000106729 0.934±0.65 0.084±0.01 0.225±0.15 0.055±0.02 0.713±0.36 0.142±0.08 0.021±0.00 3.280±0.00 0.146±0.06 0.817±0.34 0.726±0.62 0.480±0.00
ENSMUST00000132113 N/A 0.075±0.03 N/A N/A N/A 0.089±0.00 N/A N/A 0.342±0.00 1.264±0.00 0.403±0.21 2.316±0.78
ENSMUST00000138946 0.065±0.00 0.152±0.00 N/A 0.150±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Q2 CIL_0008Q2_0002 VISTA 7:109258267-109860076
CIL_000498 CIL_000498_0002 CGP 7:109758055-109865679
CIL_000499 CIL_000499_0002 CGP 7:109798676-109960470

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005576 IEA extracellular region
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037362 scube2 signal peptide, CUB domain, EGF-like 2 protein_coding Danio_rerio
ENSG00000175356 SCUBE2 signal peptide, CUB domain, EGF-like 2 protein_coding Homo_sapiens

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