C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: signal peptide, CUB domain, EGF-like 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000175356 SCUBE2 9606 - 11:9020391-9138114 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000309263 SCUBE2-005 9020391-9091601 protein_coding
  ENST00000450649 SCUBE2-003 9020575-9091546 protein_coding
  ENST00000518447 SCUBE2-008 9020890-9022029 retained_intron
  ENST00000519202 SCUBE2-007 9025480-9027525 protein_coding
  ENST00000519535 SCUBE2-006 9027489-9031260 retained_intron
  ENST00000519788 SCUBE2-011 9053139-9065911 protein_coding
  ENST00000520467 SCUBE2-001 9020884-9091599 protein_coding
  ENST00000524317 SCUBE2-004 9020445-9027190 retained_intron
  ENST00000528651 SCUBE2-010 9024207-9027539 protein_coding
  ENST00000530265 SCUBE2-009 9048073-9050397 processed_transcript
  ENST00000531429 SCUBE2-013 9053203-9066750 protein_coding
  ENST00000532532 SCUBE2-012 9022552-9025821 processed_transcript
  ENST00000534295 SCUBE2-014 9079471-9138114 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000309263ENST00000450649ENST00000518447ENST00000519202ENST00000519535ENST00000519788ENST00000520467ENST00000524317ENST00000528651ENST00000531429
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000309263 13.770±0.00 0.631±0.00 N/A 5.105±0.00 1.776±0.00 0.163±0.00 0.300±0.00 N/A 1.094±0.00 N/A 0.232±0.00 3.222±1.21 0.777±0.11
ENST00000450649 N/A N/A N/A N/A N/A 0.080±0.00 0.018±0.00 1.118±1.08 N/A N/A 0.078±0.00 2.080±0.12 0.681±0.00
ENST00000518447 N/A N/A 1.491±0.00 N/A N/A N/A 1.314±0.00 0.089±0.00 N/A N/A N/A N/A N/A
ENST00000519202 N/A N/A N/A N/A N/A N/A 0.647±0.00 N/A N/A N/A N/A N/A N/A
ENST00000519535 N/A N/A N/A N/A N/A 0.048±0.00 N/A 0.055±0.00 N/A N/A N/A N/A N/A
ENST00000519788 N/A N/A N/A N/A N/A N/A N/A 0.255±0.00 N/A N/A 0.634±0.00 N/A N/A
ENST00000520467 5.699±0.00 N/A 0.232±0.02 6.248±0.00 N/A 0.137±0.13 N/A 2.385±0.00 0.185±0.00 N/A 0.420±0.00 3.235±1.56 0.682±0.26
ENST00000524317 N/A N/A N/A N/A N/A N/A N/A N/A 0.253±0.00 N/A N/A N/A N/A
ENST00000528651 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.340±0.00 N/A N/A N/A
ENST00000531429 N/A N/A 0.789±0.00 1.458±0.00 4.026±0.00 0.130±0.00 N/A 7.686±0.00 2.642±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Q2 CIL_0008Q2_0001 VISTA 11:8432154-9033661
CIL_000498 CIL_000498_0001 CGP 11:8980576-9138114
CIL_000499 CIL_000499_0001 CGP 11:9020391-9265390

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005576 IEA extracellular region

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037362 scube2 signal peptide, CUB domain, EGF-like 2 protein_coding Danio_rerio
ENSMUSG00000007279 Scube2 signal peptide, CUB domain, EGF-like 2 protein_coding Mus_musculus

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