C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: signal peptide, CUB domain, EGF-like 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000106728 Scube2-003 ENSMUSG00000007279 10090 - 7:109798838-109865643 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastKidneyLungMuscleOvaryPlacentaENSMUST00000106728
Transcript ID Adipose Breast Kidney Lung Muscle Ovary Placenta
ENSMUST00000106728 0.014±0.00 0.061±0.03 0.103±0.00 3.734±0.57 0.069±0.00 0.738±0.50 0.235±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Q2 CIL_0008Q2_0002 VISTA 7:109258267-109860076
CIL_000498 CIL_000498_0002 CGP 7:109758055-109865679
CIL_000499 CIL_000499_0002 CGP 7:109798676-109960470

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000309263 SCUBE2-005 protein_coding Homo_sapiens 0 1502
ENST00000450649 SCUBE2-003 protein_coding Homo_sapiens 0 2881
ENST00000518447 SCUBE2-008 retained_intron Homo_sapiens 0 403
ENST00000519202 SCUBE2-007 protein_coding Homo_sapiens 0 211
ENST00000519535 SCUBE2-006 retained_intron Homo_sapiens 0 370
ENST00000519788 SCUBE2-011 protein_coding Homo_sapiens 0 627
ENST00000520467 SCUBE2-001 protein_coding Homo_sapiens 0 1502
ENST00000524317 SCUBE2-004 retained_intron Homo_sapiens 0 654
ENST00000528651 SCUBE2-010 protein_coding Homo_sapiens 0 213
ENST00000532532 SCUBE2-012 processed_transcript Homo_sapiens 3e-38 161
ENST00000534295 SCUBE2-014 processed_transcript Homo_sapiens 0 219

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