C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000499_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000175356-ENSG00000184014 CGP 9606 11:9020391-9265390
GeneTranscriptPositionBiotype
ENSG00000175356 (SCUBE2)
signal peptide, CUB domain, EGF-like 2 		ENST00000309263 (SCUBE2-005) 9020391-9091601 protein_coding
ENST00000450649 (SCUBE2-003) 9020575-9091546 protein_coding
ENST00000518447 (SCUBE2-008) 9020890-9022029 retained_intron
ENST00000519202 (SCUBE2-007) 9025480-9027525 protein_coding
ENST00000519535 (SCUBE2-006) 9027489-9031260 retained_intron
ENST00000519788 (SCUBE2-011) 9053139-9065911 protein_coding
ENST00000520467 (SCUBE2-001) 9020884-9091599 protein_coding
ENST00000524317 (SCUBE2-004) 9020445-9027190 retained_intron
ENST00000528651 (SCUBE2-010) 9024207-9027539 protein_coding
ENST00000530265 (SCUBE2-009) 9048073-9050397 processed_transcript
ENST00000531429 (SCUBE2-013) 9053203-9066750 protein_coding
ENST00000532532 (SCUBE2-012) 9022552-9025821 processed_transcript
ENST00000534295 (SCUBE2-014) 9079471-9138114 processed_transcript
ENSG00000184014 (DENND5A)
DENN/MADD domain containing 5A 		ENST00000328194 (DENND5A-001) 9138825-9265390 protein_coding
ENST00000524446 (DENND5A-011) 9145062-9152407 protein_coding
ENST00000525784 (DENND5A-014) 9139689-9145815 protein_coding
ENST00000526523 (DENND5A-010) 9175240-9178248 processed_transcript
ENST00000526707 (DENND5A-002) 9145713-9265127 nonsense_mediated_decay
ENST00000527700 (DENND5A-004) 9139504-9172245 retained_intron
ENST00000527896 (DENND5A-009) 9169923-9178917 nonsense_mediated_decay
ENST00000528725 (DENND5A-016) 9139503-9144179 protein_coding
ENST00000529977 (DENND5A-005) 9138830-9145460 retained_intron
ENST00000530044 (DENND5A-003) 9139459-9265087 protein_coding
ENST00000530780 (DENND5A-006) 9204066-9265101 nonsense_mediated_decay
ENST00000530867 (DENND5A-008) 9177930-9178949 retained_intron
ENST00000531580 (DENND5A-012) 9146797-9150759 retained_intron
ENST00000531747 (DENND5A-013) 9141941-9150173 nonsense_mediated_decay
ENST00000532696 (DENND5A-007) 9203532-9206718 retained_intron
ENST00000533737 (DENND5A-015) 9139515-9143452 protein_coding
ENSG00000213538 (KRT8P41)
keratin 8 pseudogene 41 		ENST00000533985 (KRT8P41-001) 9094377-9095890 processed_pseudogene
ENSG00000253973 (RP11-467K18.2)
 ENST00000521394 (RP11-467K18.2-002) 9057251-9065154 antisense
ENST00000531592 (RP11-467K18.2-001) 9004162-9057284 antisense
ENSG00000255097 (RP11-5L12.1)
 ENST00000528520 (RP11-5L12.1-001) 9242448-9245509 sense_intronic

Homo sapiens Ensembl (GRCh38)

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CIL_000499_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000007279-ENSMUSG00000035901 CGP 10090 7:109798676-109960470
GeneTranscriptPositionBiotype
ENSMUSG00000007279 (Scube2)
signal peptide, CUB domain, EGF-like 2 		ENSMUST00000007423 (Scube2-004) 109798676-109865586 protein_coding
ENSMUST00000106728 (Scube2-003) 109798838-109865643 protein_coding
ENSMUST00000106729 (Scube2-001) 109798690-109865679 protein_coding
ENSMUST00000132113 (Scube2-002) 109799094-109840927 processed_transcript
ENSMUST00000138946 (Scube2-005) 109800650-109808231 processed_transcript
ENSMUSG00000035901 (Dennd5a)
DENN/MADD domain containing 5A 		ENSMUST00000080437 (Dennd5a-001) 109893780-109960470 protein_coding
ENSMUST00000106722 (Dennd5a-002) 109893780-109960400 protein_coding
ENSMUST00000130354 (Dennd5a-008) 109893780-109896699 retained_intron
ENSMUST00000134331 (Dennd5a-006) 109899072-109900464 retained_intron
ENSMUST00000139579 (Dennd5a-005) 109921264-109925050 processed_transcript
ENSMUST00000151923 (Dennd5a-004) 109934059-109960323 processed_transcript
ENSMUST00000154002 (Dennd5a-003) 109907405-109920650 retained_intron
ENSMUST00000156858 (Dennd5a-007) 109896380-109897556 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000499_0001ENSG00000175356ENST00000309263ENST00000450649ENST00000518447ENST00000519202ENST00000519535ENST00000519788ENST00000520467ENST00000524317ENST00000528651ENST00000531429ENSG00000184014ENST00000328194ENST00000526707ENST00000527700ENST00000528725ENST00000529977ENST00000530044ENST00000531747ENSG00000213538ENST00000533985ENSG00000253973ENST00000521394ENST00000531592ENSG00000255097ENST00000528520CIL_000499_0002ENSMUSG00000007279ENSMUST00000007423ENSMUST00000106728ENSMUST00000106729ENSMUST00000132113ENSMUST00000138946ENSMUSG00000035901ENSMUST00000080437ENSMUST00000106722ENSMUST00000130354
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000175356 ENST00000309263 13.770±0.00 0.631±0.00 N/A N/A 5.105±0.00 1.776±0.00 0.163±0.00 0.300±0.00 N/A 1.094±0.00 N/A 0.232±0.00 3.222±1.21 0.777±0.11
ENST00000450649 N/A N/A N/A N/A N/A N/A 0.080±0.00 0.018±0.00 1.118±1.08 N/A N/A 0.078±0.00 2.080±0.12 0.681±0.00
ENST00000518447 N/A N/A N/A 1.491±0.00 N/A N/A N/A 1.314±0.00 0.089±0.00 N/A N/A N/A N/A N/A
ENST00000519202 N/A N/A N/A N/A N/A N/A N/A 0.647±0.00 N/A N/A N/A N/A N/A N/A
ENST00000519535 N/A N/A N/A N/A N/A N/A 0.048±0.00 N/A 0.055±0.00 N/A N/A N/A N/A N/A
ENST00000519788 N/A N/A N/A N/A N/A N/A N/A N/A 0.255±0.00 N/A N/A 0.634±0.00 N/A N/A
ENST00000520467 5.699±0.00 N/A N/A 0.232±0.02 6.248±0.00 N/A 0.137±0.13 N/A 2.385±0.00 0.185±0.00 N/A 0.420±0.00 3.235±1.56 0.682±0.26
ENST00000524317 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.253±0.00 N/A N/A N/A N/A
ENST00000528651 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.340±0.00 N/A N/A N/A
ENST00000530265 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531429 N/A N/A N/A 0.789±0.00 1.458±0.00 4.026±0.00 0.130±0.00 N/A 7.686±0.00 2.642±0.00 N/A N/A N/A N/A
ENST00000532532 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534295 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000184014 ENST00000328194 8.904±0.00 16.818±0.00 N/A 14.762±9.94 12.913±11.24 9.571±8.28 12.750±10.02 10.253±0.00 2.680±0.12 15.118±11.99 6.413±0.00 11.745±4.67 9.348±1.40 11.088±6.52
ENST00000524446 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525784 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526523 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526707 N/A N/A 1.011±0.00 11.309±0.00 N/A N/A N/A N/A N/A N/A 0.827±0.00 0.764±0.00 N/A N/A
ENST00000527700 N/A N/A 0.919±0.00 N/A N/A 1.004±0.00 1.817±0.00 0.384±0.00 2.115±0.00 N/A 0.718±0.00 2.223±1.11 N/A N/A
ENST00000527896 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528725 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.374±0.00 N/A
ENST00000529977 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.183±0.00 N/A N/A
ENST00000530044 N/A N/A 1.852±0.00 5.524±0.00 3.454±0.00 1.186±0.00 3.781±1.85 0.526±0.00 3.794±0.00 2.412±0.00 0.455±0.00 0.975±0.00 4.787±0.00 3.549±0.00
ENST00000530780 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530867 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531580 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531747 N/A N/A N/A N/A N/A N/A N/A 1.412±0.00 N/A N/A N/A N/A N/A N/A
ENST00000532696 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533737 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000213538 ENST00000533985 0.038±0.00 0.042±0.00 N/A 0.080±0.00 0.015±0.00 0.014±0.00 N/A 0.015±0.00 0.066±0.00 0.015±0.00 N/A 0.021±0.00 0.019±0.00 0.391±0.29
ENSG00000253973 ENST00000521394 0.012±0.00 N/A N/A 0.213±0.00 N/A N/A N/A N/A N/A N/A N/A 0.034±0.00 N/A 0.253±0.01
ENST00000531592 N/A 0.104±0.00 N/A N/A N/A 0.163±0.00 N/A N/A N/A N/A N/A N/A N/A 0.452±0.08
ENSG00000255097 ENST00000528520 0.363±0.00 1.433±0.00 N/A 0.384±0.11 0.348±0.06 0.296±0.00 0.427±0.14 0.942±0.00 0.347±0.03 0.495±0.10 0.291±0.00 0.334±0.18 N/A 0.252±0.16
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000007279 ENSMUST00000007423 0.037±0.00 0.059±0.00 N/A N/A 0.018±0.00 N/A N/A 0.079±0.02 N/A N/A 0.347±0.00 N/A N/A 0.316±0.00
ENSMUST00000106728 0.014±0.00 N/A N/A N/A 0.061±0.03 N/A N/A 0.103±0.00 N/A 3.734±0.57 0.069±0.00 0.738±0.50 0.235±0.00 N/A
ENSMUST00000106729 0.934±0.65 0.084±0.01 N/A 0.225±0.15 0.055±0.02 0.713±0.36 N/A 0.142±0.08 0.021±0.00 3.280±0.00 0.146±0.06 0.817±0.34 0.726±0.62 0.480±0.00
ENSMUST00000132113 N/A 0.075±0.03 N/A N/A N/A N/A N/A 0.089±0.00 N/A N/A 0.342±0.00 1.264±0.00 0.403±0.21 2.316±0.78
ENSMUST00000138946 0.065±0.00 0.152±0.00 N/A N/A 0.150±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000035901 ENSMUST00000080437 26.019±8.59 27.311±13.00 16.140±4.43 9.421±1.29 8.893±1.13 6.792±2.44 13.824±1.41 7.843±2.47 3.901±1.56 23.783±9.48 8.714±1.15 24.908±9.67 9.361±3.17 7.249±3.42
ENSMUST00000106722 N/A N/A N/A 23.941±5.25 21.530±0.00 N/A N/A N/A N/A N/A 2.066±0.00 6.801±0.00 N/A N/A
ENSMUST00000130354 N/A 38.724±9.81 N/A N/A 16.113±1.54 9.886±1.62 14.350±0.00 9.592±1.66 4.945±0.85 26.783±0.00 N/A 31.637±9.21 N/A N/A
ENSMUST00000134331 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139579 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151923 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154002 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156858 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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