C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000498_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000175352-ENSG00000175356 CGP 9606 11:8980576-9138114
GeneTranscriptPositionBiotype
ENSG00000175352 (NRIP3)
nuclear receptor interacting protein 3 		ENST00000309166 (NRIP3-001) 8980576-9004049 protein_coding
ENST00000525100 (NRIP3-003) 8985771-9004001 protein_coding
ENST00000531090 (NRIP3-002) 8983579-9004049 protein_coding
ENST00000531142 (NRIP3-004) 8983518-8985756 protein_coding
ENST00000534759 (NRIP3-005) 8982559-8984103 protein_coding
ENSG00000175356 (SCUBE2)
signal peptide, CUB domain, EGF-like 2 		ENST00000309263 (SCUBE2-005) 9020391-9091601 protein_coding
ENST00000450649 (SCUBE2-003) 9020575-9091546 protein_coding
ENST00000518447 (SCUBE2-008) 9020890-9022029 retained_intron
ENST00000519202 (SCUBE2-007) 9025480-9027525 protein_coding
ENST00000519535 (SCUBE2-006) 9027489-9031260 retained_intron
ENST00000519788 (SCUBE2-011) 9053139-9065911 protein_coding
ENST00000520467 (SCUBE2-001) 9020884-9091599 protein_coding
ENST00000524317 (SCUBE2-004) 9020445-9027190 retained_intron
ENST00000528651 (SCUBE2-010) 9024207-9027539 protein_coding
ENST00000530265 (SCUBE2-009) 9048073-9050397 processed_transcript
ENST00000531429 (SCUBE2-013) 9053203-9066750 protein_coding
ENST00000532532 (SCUBE2-012) 9022552-9025821 processed_transcript
ENST00000534295 (SCUBE2-014) 9079471-9138114 processed_transcript
ENSG00000213538 (KRT8P41)
keratin 8 pseudogene 41 		ENST00000533985 (KRT8P41-001) 9094377-9095890 processed_pseudogene
ENSG00000253973 (RP11-467K18.2)
 ENST00000521394 (RP11-467K18.2-002) 9057251-9065154 antisense
ENST00000531592 (RP11-467K18.2-001) 9004162-9057284 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_000498_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000034825-ENSMUSG00000007279 CGP 10090 7:109758055-109865679
GeneTranscriptPositionBiotype
ENSMUSG00000007279 (Scube2)
signal peptide, CUB domain, EGF-like 2 		ENSMUST00000007423 (Scube2-004) 109798676-109865586 protein_coding
ENSMUST00000106728 (Scube2-003) 109798838-109865643 protein_coding
ENSMUST00000106729 (Scube2-001) 109798690-109865679 protein_coding
ENSMUST00000132113 (Scube2-002) 109799094-109840927 processed_transcript
ENSMUST00000138946 (Scube2-005) 109800650-109808231 processed_transcript
ENSMUSG00000034825 (Nrip3)
nuclear receptor interacting protein 3 		ENSMUST00000033331 (Nrip3-002) 109758059-109781545 protein_coding
ENSMUST00000041460 (Nrip3-001) 109758055-109782025 protein_coding
ENSMUSG00000094713 (Gm22822)
predicted gene, 22822 		ENSMUST00000177941 (Gm22822-201) 109774612-109774718 snRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000498_0001ENSG00000175352ENST00000309166ENST00000525100ENST00000531090ENST00000531142ENST00000534759ENSG00000175356ENST00000309263ENST00000450649ENST00000518447ENST00000519202ENST00000519535ENST00000519788ENST00000520467ENST00000524317ENST00000528651ENST00000530265ENST00000531429ENST00000532532ENST00000534295ENSG00000213538ENST00000533985ENSG00000253973ENST00000521394ENST00000531592CIL_000498_0002ENSMUSG00000007279ENSMUST00000007423ENSMUST00000106728ENSMUST00000106729ENSMUST00000132113ENSMUST00000138946ENSMUSG00000034825ENSMUST00000033331ENSMUST00000041460ENSMUSG00000094713ENSMUST00000177941
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000498_0001ENSG00000175352ENST00000309166ENST00000525100ENST00000531142ENST00000534759ENSG00000175356ENST00000309263ENST00000450649ENST00000518447ENST00000519202ENST00000519535ENST00000519788ENST00000520467ENST00000524317ENST00000528651ENST00000531429ENSG00000213538ENST00000533985ENSG00000253973ENST00000521394ENST00000531592CIL_000498_0002ENSMUSG00000007279ENSMUST00000007423ENSMUST00000106728ENSMUST00000106729ENSMUST00000132113ENSMUST00000138946ENSMUSG00000034825ENSMUST00000033331ENSMUST00000041460ENSMUSG00000094713ENSMUST00000177941
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000175352 ENST00000309166 0.633±0.00 N/A 0.088±0.00 8.796±0.93 0.105±0.00 0.199±0.12 0.328±0.00 0.085±0.00 0.202±0.14 N/A 0.016±0.00 0.409±0.25 0.055±0.00 13.667±3.39
ENST00000525100 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 26.643±6.78
ENST00000531090 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531142 N/A N/A N/A N/A N/A N/A N/A 0.294±0.00 N/A N/A N/A N/A N/A N/A
ENST00000534759 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.245±0.00 N/A N/A N/A N/A
ENSG00000175356 ENST00000309263 13.770±0.00 0.631±0.00 N/A N/A 5.105±0.00 1.776±0.00 0.163±0.00 0.300±0.00 N/A 1.094±0.00 N/A 0.232±0.00 3.222±1.21 0.777±0.11
ENST00000450649 N/A N/A N/A N/A N/A N/A 0.080±0.00 0.018±0.00 1.118±1.08 N/A N/A 0.078±0.00 2.080±0.12 0.681±0.00
ENST00000518447 N/A N/A N/A 1.491±0.00 N/A N/A N/A 1.314±0.00 0.089±0.00 N/A N/A N/A N/A N/A
ENST00000519202 N/A N/A N/A N/A N/A N/A N/A 0.647±0.00 N/A N/A N/A N/A N/A N/A
ENST00000519535 N/A N/A N/A N/A N/A N/A 0.048±0.00 N/A 0.055±0.00 N/A N/A N/A N/A N/A
ENST00000519788 N/A N/A N/A N/A N/A N/A N/A N/A 0.255±0.00 N/A N/A 0.634±0.00 N/A N/A
ENST00000520467 5.699±0.00 N/A N/A 0.232±0.02 6.248±0.00 N/A 0.137±0.13 N/A 2.385±0.00 0.185±0.00 N/A 0.420±0.00 3.235±1.56 0.682±0.26
ENST00000524317 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.253±0.00 N/A N/A N/A N/A
ENST00000528651 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.340±0.00 N/A N/A N/A
ENST00000530265 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531429 N/A N/A N/A 0.789±0.00 1.458±0.00 4.026±0.00 0.130±0.00 N/A 7.686±0.00 2.642±0.00 N/A N/A N/A N/A
ENST00000532532 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534295 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000213538 ENST00000533985 0.038±0.00 0.042±0.00 N/A 0.080±0.00 0.015±0.00 0.014±0.00 N/A 0.015±0.00 0.066±0.00 0.015±0.00 N/A 0.021±0.00 0.019±0.00 0.391±0.29
ENSG00000253973 ENST00000521394 0.012±0.00 N/A N/A 0.213±0.00 N/A N/A N/A N/A N/A N/A N/A 0.034±0.00 N/A 0.253±0.01
ENST00000531592 N/A 0.104±0.00 N/A N/A N/A 0.163±0.00 N/A N/A N/A N/A N/A N/A N/A 0.452±0.08
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000007279 ENSMUST00000007423 0.037±0.00 0.059±0.00 N/A N/A 0.018±0.00 N/A N/A 0.079±0.02 N/A N/A 0.347±0.00 N/A N/A 0.316±0.00
ENSMUST00000106728 0.014±0.00 N/A N/A N/A 0.061±0.03 N/A N/A 0.103±0.00 N/A 3.734±0.57 0.069±0.00 0.738±0.50 0.235±0.00 N/A
ENSMUST00000106729 0.934±0.65 0.084±0.01 N/A 0.225±0.15 0.055±0.02 0.713±0.36 N/A 0.142±0.08 0.021±0.00 3.280±0.00 0.146±0.06 0.817±0.34 0.726±0.62 0.480±0.00
ENSMUST00000132113 N/A 0.075±0.03 N/A N/A N/A N/A N/A 0.089±0.00 N/A N/A 0.342±0.00 1.264±0.00 0.403±0.21 2.316±0.78
ENSMUST00000138946 0.065±0.00 0.152±0.00 N/A N/A 0.150±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000034825 ENSMUST00000033331 0.047±0.04 0.334±0.20 N/A 5.357±6.52 0.057±0.02 0.167±0.05 0.066±0.02 0.374±0.14 0.136±0.08 0.088±0.01 0.012±0.01 0.158±0.08 0.840±1.08 0.631±0.25
ENSMUST00000041460 0.019±0.02 0.079±0.04 N/A 2.713±0.00 0.014±0.00 N/A N/A 0.289±0.00 0.007±0.00 N/A 0.006±0.00 0.032±0.00 N/A N/A
ENSMUSG00000094713 ENSMUST00000177941 N/A N/A N/A 4.871±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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