C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: signal peptide, CUB domain, EGF-like 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000007423 Scube2-004 ENSMUSG00000007279 10090 - 7:109798676-109865586 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastKidneyMuscleTestisENSMUST00000007423
Transcript ID Adipose Adrenal Breast Kidney Muscle Testis
ENSMUST00000007423 0.037±0.00 0.059±0.00 0.018±0.00 0.079±0.02 0.347±0.00 0.316±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Q2 CIL_0008Q2_0002 VISTA 7:109258267-109860076
CIL_000498 CIL_000498_0002 CGP 7:109758055-109865679
CIL_000499 CIL_000499_0002 CGP 7:109798676-109960470

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005576 IEA extracellular region
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000309263 SCUBE2-005 protein_coding Homo_sapiens 0 3620
ENST00000450649 SCUBE2-003 protein_coding Homo_sapiens 0 1498
ENST00000518447 SCUBE2-008 retained_intron Homo_sapiens 0 403
ENST00000519202 SCUBE2-007 protein_coding Homo_sapiens 0 427
ENST00000519535 SCUBE2-006 retained_intron Homo_sapiens 0 460
ENST00000519788 SCUBE2-011 protein_coding Homo_sapiens 0 688
ENST00000520467 SCUBE2-001 protein_coding Homo_sapiens 0 1642
ENST00000524317 SCUBE2-004 retained_intron Homo_sapiens 0 654
ENST00000528651 SCUBE2-010 protein_coding Homo_sapiens 0 444
ENST00000532532 SCUBE2-012 processed_transcript Homo_sapiens 3e-38 161
ENST00000534295 SCUBE2-014 processed_transcript Homo_sapiens 0 219

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