C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: GTP binding protein 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000007610 Gtpbp3 10090 + 8:71488103-71499583 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000007754 Gtpbp3-001 71488103-71493400 protein_coding
  ENSMUST00000095259 Gtpbp3-002 71488721-71493400 nonsense_mediated_decay
  ENSMUST00000124349 Gtpbp3-004 71488743-71493400 retained_intron
  ENSMUST00000127741 Gtpbp3-003 71488751-71493400 nonsense_mediated_decay
  ENSMUST00000132907 Gtpbp3-006 71488734-71489578 retained_intron
  ENSMUST00000146551 Gtpbp3-007 71489459-71491411 retained_intron
  ENSMUST00000150969 Gtpbp3-005 71488728-71499583 nonsense_mediated_decay
  ENSMUST00000168847 Gtpbp3-201 71488103-71493400 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000007754ENSMUST00000095259ENSMUST00000124349ENSMUST00000127741ENSMUST00000146551ENSMUST00000150969
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000007754 1.848±0.32 N/A 1.661±0.14 0.879±0.00 1.811±0.00 N/A 1.325±0.00 1.111±0.03 N/A 1.226±0.10 N/A N/A 0.627±0.00 0.585±0.21
ENSMUST00000095259 7.245±0.34 15.416±2.80 3.688±0.56 4.770±0.54 8.551±3.41 9.492±1.34 5.336±0.99 6.749±1.39 4.750±0.82 5.681±0.98 1.992±0.37 13.758±1.88 4.569±2.17 0.964±0.48
ENSMUST00000124349 2.647±0.86 2.891±0.31 2.182±0.73 4.130±0.27 2.448±0.35 1.866±0.32 1.283±0.10 1.189±0.23 1.174±0.20 2.244±0.41 0.988±0.02 3.729±1.48 1.274±0.41 0.616±0.17
ENSMUST00000127741 N/A N/A 1.254±0.13 N/A 1.670±0.00 N/A N/A 2.222±0.00 0.707±0.00 N/A 0.770±0.18 3.050±1.16 2.171±1.39 N/A
ENSMUST00000146551 N/A N/A N/A 12.584±0.00 N/A N/A N/A N/A N/A N/A N/A 15.656±0.00 8.085±0.00 1.928±0.00
ENSMUST00000150969 1.710±0.03 7.183±2.19 1.731±0.26 3.535±1.42 2.431±0.34 4.186±1.00 N/A 1.636±0.17 1.647±0.52 2.435±0.69 1.019±0.27 5.258±1.48 1.505±0.48 0.476±0.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004E0 CIL_0004E0_0003 CGP 8:71476023-71499583
CIL_00061V CIL_00061V_0002 CGP 8:71488103-71511769

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005525 IEA GTP binding
GO:0005634 IEA nucleus
GO:0005739 IDA mitochondrion
GO:0006184 IEA GTP catabolic process
GO:0006400 IEA tRNA modification

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000018650 gtpbp3 GTP binding protein 3 protein_coding Danio_rerio
ENSG00000130299 GTPBP3 GTP binding protein 3 (mitochondrial) protein_coding Homo_sapiens

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