C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: AT rich interactive domain 1A (SWI-like)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000145664 Arid1a-001 ENSMUSG00000007880 10090 - 4:133679008-133753611 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000145664
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000145664 6.327±2.14 8.585±2.15 3.348±0.01 9.201±4.64 10.167±5.52 5.114±1.51 1.474±0.22 2.869±0.43 2.901±1.10 8.957±2.33 2.103±1.27 7.036±2.49 9.406±5.99 3.591±1.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007T4 CIL_0007T4_0002 VISTA 4:133429051-134030305

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000790 IDA nuclear chromatin
GO:0001843 IMP neural tube closure
GO:0003205 IMP cardiac chamber development
GO:0003408 IMP optic cup formation involved in camera-type eye development
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0006325 IPI chromatin organization
GO:0016514 IDA SWI/SNF complex
GO:0030900 IMP forebrain development
GO:0031491 IDA nucleosome binding
GO:0043044 IDA ATP-dependent chromatin remodeling
GO:0060674 IMP placenta blood vessel development
GO:0090544 IDA BAF-type complex
GO:1901998 IMP toxin transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000140747 arid1ab-001 protein_coding Danio_rerio 0 392
ENSDART00000135930 arid1aa-001 protein_coding Danio_rerio 4.2039e-45 189
ENSDART00000084263 arid1aa-201 protein_coding Danio_rerio 9.80909e-45 187
ENST00000324856 ARID1A-001 protein_coding Homo_sapiens 0 11800
ENST00000346085 ARID1B-001 protein_coding Homo_sapiens 2e-28 134
ENST00000374152 ARID1A-003 protein_coding Homo_sapiens 0 8059
ENST00000414678 ARID1B-005 protein_coding Homo_sapiens 2e-28 134
ENST00000430291 ARID1A-005 retained_intron Homo_sapiens 0 512
ENST00000430799 ARID1A-009 protein_coding Homo_sapiens 0 5367
ENST00000457599 ARID1A-002 protein_coding Homo_sapiens 0 6124
ENST00000466382 ARID1A-004 nonsense_mediated_decay Homo_sapiens 0 3022
ENST00000524572 ARID1A-007 protein_coding Homo_sapiens 0 521
ENST00000532781 ARID1A-006 nonsense_mediated_decay Homo_sapiens 0 2604
ENST00000615191 ARID1A-201 protein_coding Homo_sapiens 0 5053

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