C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: AT rich interactive domain 1A (SWI-like)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000117713 ARID1A 9606 + 1:26696033-26782104 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000324856 ARID1A-001 26696033-26782104 protein_coding
  ENST00000374152 ARID1A-003 26729380-26780756 protein_coding
  ENST00000430291 ARID1A-005 26766270-26768001 retained_intron
  ENST00000430799 ARID1A-009 26771229-26781187 protein_coding
  ENST00000457599 ARID1A-002 26696404-26780817 protein_coding
  ENST00000466382 ARID1A-004 26772964-26781177 nonsense_mediated_decay
  ENST00000524572 ARID1A-007 26727708-26731318 protein_coding
  ENST00000532781 ARID1A-006 26774870-26780983 nonsense_mediated_decay
  ENST00000615191 ARID1A-201 26729380-26774901 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000324856ENST00000374152ENST00000430799ENST00000457599ENST00000466382ENST00000532781ENST00000615191
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000324856 8.757±0.00 7.767±0.00 0.288±0.00 9.730±0.00 2.312±1.48 6.697±0.00 7.252±0.00 9.406±0.00 1.950±0.72 5.632±0.00 5.286±4.52 10.436±8.23 4.837±1.04 7.182±0.48
ENST00000374152 N/A N/A N/A N/A 1.993±0.00 N/A N/A N/A N/A 1.976±0.00 2.153±0.00 N/A N/A N/A
ENST00000430799 3.229±0.00 N/A N/A N/A N/A N/A N/A 1.460±0.00 N/A N/A N/A N/A N/A 3.781±0.00
ENST00000457599 N/A N/A 0.994±0.00 N/A N/A 1.004±0.00 N/A 1.242±0.00 N/A 1.026±0.00 N/A 1.177±0.00 N/A N/A
ENST00000466382 N/A N/A N/A 5.431±0.00 N/A 3.383±0.00 N/A 6.136±0.00 N/A N/A N/A 4.921±0.00 3.940±0.20 5.714±0.00
ENST00000532781 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.627±0.00 1.830±0.00 N/A N/A
ENST00000615191 N/A N/A N/A N/A N/A 1.471±0.00 0.573±0.00 N/A 1.808±0.00 2.534±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007T4 CIL_0007T4_0001 VISTA 1:26423129-27024414

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000790 IDA nuclear chromatin
GO:0001843 IEA neural tube closure
GO:0003205 IEA cardiac chamber development
GO:0003408 IEA optic cup formation involved in camera-type eye development
GO:0003677 NAS:IEA DNA binding
GO:0003713 NAS transcription coactivator activity
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0006325 IEA chromatin organization
GO:0006337 IDA nucleosome disassembly
GO:0006338 IDA:IEA chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006357 NAS regulation of transcription from RNA polymerase II promoter
GO:0016514 IDA SWI/SNF complex
GO:0016922 IPI ligand-dependent nuclear receptor binding
GO:0030520 IDA intracellular estrogen receptor signaling pathway
GO:0030521 IDA androgen receptor signaling pathway
GO:0030900 IEA forebrain development
GO:0031491 IEA nucleosome binding
GO:0042766 TAS nucleosome mobilization
GO:0042921 IDA glucocorticoid receptor signaling pathway
GO:0043044 IEA ATP-dependent chromatin remodeling
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0048096 TAS chromatin-mediated maintenance of transcription
GO:0060674 IEA placenta blood vessel development
GO:0071564 ISS npBAF complex
GO:0071565 ISS nBAF complex
GO:0090544 IEA BAF-type complex
GO:1901998 IEA toxin transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060073 arid1ab AT rich interactive domain 1Ab (SWI-like) protein_coding Danio_rerio
ENSDARG00000079879 arid1aa AT rich interactive domain 1Aa (SWI-like) protein_coding Danio_rerio
ENSMUSG00000007880 Arid1a AT rich interactive domain 1A (SWI-like) protein_coding Mus_musculus

Loading