C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: secernin 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000008226 Scrn3 10090 + 2:73312601-73337818 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000090811 Scrn3-001 73312601-73337818 protein_coding
  ENSMUST00000112050 Scrn3-003 73312654-73320796 protein_coding
  ENSMUST00000123621 Scrn3-002 73319400-73336299 processed_transcript
  ENSMUST00000139926 Scrn3-006 73312676-73322022 processed_transcript
  ENSMUST00000154158 Scrn3-005 73312659-73329802 processed_transcript
  ENSMUST00000155019 Scrn3-004 73312659-73315801 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000090811ENSMUST00000112050ENSMUST00000154158
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000090811 2.828±0.89 2.211±0.67 5.306±0.92 N/A 3.902±1.41 1.436±0.72 3.184±0.22 6.405±1.70 10.564±2.38 3.266±0.89 16.625±0.86 2.775±1.25 3.272±1.23 1.533±0.01
ENSMUST00000112050 3.260±1.10 3.264±0.51 3.406±0.39 N/A 1.647±0.61 1.649±0.20 1.379±0.00 3.860±0.61 7.723±2.61 3.112±0.37 N/A 2.757±1.16 4.487±2.22 N/A
ENSMUST00000154158 N/A N/A N/A 23.476±0.00 N/A N/A N/A N/A N/A N/A N/A 23.273±0.00 17.833±7.12 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008JW CIL_0008JW_0002 VISTA 2:72839371-73441413
CIL_0008K1 CIL_0008K1_0002 VISTA 2:72842671-73444272
CIL_0008S8 CIL_0008S8_0002 VISTA 2:72879758-73480791
CIL_00096H CIL_00096H_0002 VISTA 2:72968418-73569496
CIL_0008GI CIL_0008GI_0002 VISTA 2:72975594-73577184
CIL_0008K2 CIL_0008K2_0002 VISTA 2:72979567-73580473
CIL_0001HA CIL_0001HA_0002 CGP 2:73271925-73312701
CIL_0003IH CIL_0003IH_0003 CGP 2:73283105-73337818
CIL_00063Z CIL_00063Z_0003 CGP 2:73312601-73386572

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0006508 IEA proteolysis
GO:0008150 ND biological_process
GO:0016805 IEA dipeptidase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016611 scrn3 secernin 3 protein_coding Danio_rerio
ENSG00000144306 SCRN3 secernin 3 protein_coding Homo_sapiens

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