C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00063Z_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000016611-ENSDARG00000090804 CGP 7955 9:2463941-2513969
GeneTranscriptPositionBiotype
ENSDARG00000016611 (scrn3)
secernin 3 		ENSDART00000016710 (scrn3-001) 2463941-2476232 protein_coding
ENSDART00000135076 (scrn3-003) 2463982-2469589 protein_coding
ENSDART00000137706 (scrn3-002) 2463981-2468428 retained_intron
ENSDARG00000090804 (gpr155a)
G protein-coupled receptor 155a 		ENSDART00000126719 (gpr155a-201) 2480994-2510281 protein_coding
ENSDART00000147034 (gpr155a-001) 2481395-2513969 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_00063Z_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000144306-ENSG00000163328 CGP 9606 2:174395730-174487094
GeneTranscriptPositionBiotype
ENSG00000144306 (SCRN3)
secernin 3 		ENST00000272732 (SCRN3-001) 174395745-174429575 protein_coding
ENST00000409673 (SCRN3-006) 174395745-174428417 protein_coding
ENST00000424069 (SCRN3-009) 174395792-174400103 protein_coding
ENST00000427038 (SCRN3-004) 174395808-174401054 protein_coding
ENST00000435964 (SCRN3-002) 174395752-174398314 protein_coding
ENST00000437944 (SCRN3-008) 174395730-174427864 nonsense_mediated_decay
ENST00000458563 (SCRN3-003) 174395741-174404210 protein_coding
ENST00000475928 (SCRN3-010) 174410344-174428035 processed_transcript
ENST00000488349 (SCRN3-005) 174395795-174397404 processed_transcript
ENST00000490927 (SCRN3-007) 174395743-174424570 processed_transcript
ENST00000548031 (SCRN3-013) 174398195-174404190 protein_coding
ENST00000548868 (SCRN3-011) 174395730-174428317 nonsense_mediated_decay
ENST00000548921 (SCRN3-012) 174410037-174428859 processed_transcript
ENST00000549848 (SCRN3-014) 174410082-174427895 processed_transcript
ENST00000610561 (SCRN3-201) 174395778-174428128 protein_coding
ENSG00000163328 (GPR155)
G protein-coupled receptor 155 		ENST00000295500 (GPR155-002) 174435144-174487037 protein_coding
ENST00000392551 (GPR155-003) 174434152-174487094 protein_coding
ENST00000392552 (GPR155-001) 174432238-174487080 protein_coding
ENST00000459996 (GPR155-005) 174436306-174445422 processed_transcript
ENST00000497620 (GPR155-004) 174482873-174487000 processed_transcript
ENST00000614352 (GPR155-201) 174431571-174487088 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_00063Z_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000008226-ENSMUSG00000041762 CGP 10090 2:73312601-73386572
GeneTranscriptPositionBiotype
ENSMUSG00000008226 (Scrn3)
secernin 3 		ENSMUST00000090811 (Scrn3-001) 73312601-73337818 protein_coding
ENSMUST00000112050 (Scrn3-003) 73312654-73320796 protein_coding
ENSMUST00000123621 (Scrn3-002) 73319400-73336299 processed_transcript
ENSMUST00000139926 (Scrn3-006) 73312676-73322022 processed_transcript
ENSMUST00000154158 (Scrn3-005) 73312659-73329802 processed_transcript
ENSMUST00000155019 (Scrn3-004) 73312659-73315801 processed_transcript
ENSMUSG00000041762 (Gpr155)
G protein-coupled receptor 155 		ENSMUST00000048504 (Gpr155-002) 73350892-73386398 processed_transcript
ENSMUST00000076463 (Gpr155-001) 73341506-73386572 protein_coding
ENSMUST00000112043 (Gpr155-004) 73342990-73386443 protein_coding
ENSMUST00000112044 (Gpr155-005) 73341958-73386412 protein_coding
ENSMUST00000129184 (Gpr155-006) 73362420-73370129 processed_transcript
ENSMUST00000131430 (Gpr155-007) 73347647-73362511 protein_coding
ENSMUST00000134595 (Gpr155-003) 73381406-73386411 retained_intron
ENSMUST00000184503 (Gpr155-008) 73350892-73386398 retained_intron
ENSMUSG00000041777 (Cir1)
corepressor interacting with RBPJ, 1 		ENSMUST00000058615 (Cir1-001) 73283105-73312701 protein_coding
ENSMUST00000136519 (Cir1-002) 73305919-73312566 processed_transcript
ENSMUSG00000086546 (Gm13709)
predicted gene 13709 		ENSMUST00000138573 (Gm13709-001) 73370909-73379297 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00063Z_0001ENSDARG00000016611ENSDART00000016710ENSDART00000135076ENSDART00000137706ENSDARG00000090804ENSDART00000126719ENSDART00000147034CIL_00063Z_0002ENSG00000144306ENST00000272732ENST00000409673ENST00000424069ENST00000427038ENST00000435964ENST00000437944ENST00000458563ENST00000475928ENST00000488349ENST00000490927ENST00000548031ENST00000548868ENST00000548921ENST00000549848ENST00000610561ENSG00000163328ENST00000295500ENST00000392551ENST00000392552ENST00000459996ENST00000497620ENST00000614352CIL_00063Z_0003ENSMUSG00000008226ENSMUST00000090811ENSMUST00000112050ENSMUST00000123621ENSMUST00000139926ENSMUST00000154158ENSMUST00000155019ENSMUSG00000041762ENSMUST00000048504ENSMUST00000076463ENSMUST00000112043ENSMUST00000112044ENSMUST00000129184ENSMUST00000131430ENSMUST00000134595ENSMUST00000184503ENSMUSG00000041777ENSMUST00000058615ENSMUST00000136519ENSMUSG00000086546ENSMUST00000138573
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00063Z_0001ENSDARG00000016611ENSDART00000016710ENSDARG00000090804ENSDART00000126719ENSDART00000147034CIL_00063Z_0002ENSG00000144306ENST00000272732ENST00000409673ENST00000437944ENST00000475928ENST00000490927ENST00000548031ENST00000549848ENST00000610561ENSG00000163328ENST00000295500ENST00000392551ENST00000392552ENST00000614352CIL_00063Z_0003ENSMUSG00000008226ENSMUST00000090811ENSMUST00000112050ENSMUST00000154158ENSMUSG00000041762ENSMUST00000048504ENSMUST00000076463ENSMUST00000112043ENSMUST00000112044ENSMUST00000131430ENSMUSG00000041777ENSMUST00000058615ENSMUST00000136519ENSMUSG00000086546ENSMUST00000138573
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000016611 ENSDART00000016710 N/A N/A N/A 4.821±3.60 N/A N/A 4.837±1.08 2.424±0.61 0.623±0.00 N/A N/A N/A N/A N/A
ENSDART00000135076 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000137706 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000090804 ENSDART00000126719 N/A N/A N/A N/A N/A N/A 0.513±0.00 N/A 0.429±0.00 N/A N/A N/A N/A N/A
ENSDART00000147034 N/A N/A N/A 0.891±0.00 N/A N/A 2.132±0.00 N/A 1.973±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000144306 ENST00000272732 N/A N/A 0.335±0.00 1.211±0.21 1.589±0.74 N/A 0.453±0.00 1.228±0.00 N/A N/A N/A N/A 1.076±0.00 1.485±0.00
ENST00000409673 0.898±0.00 N/A 2.246±0.00 1.968±0.00 1.029±0.33 N/A 0.823±0.00 N/A 1.639±0.00 N/A N/A 3.200±0.00 1.169±0.00 1.580±0.00
ENST00000424069 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000427038 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000435964 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000437944 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.900±0.00 3.367±0.00
ENST00000458563 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475928 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.656±0.00 N/A N/A
ENST00000488349 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490927 1.552±0.00 N/A N/A 4.393±2.21 2.679±0.80 0.888±0.00 1.993±0.00 3.951±0.00 2.057±0.00 1.043±0.00 N/A 3.299±0.00 2.736±0.00 2.891±0.32
ENST00000548031 N/A N/A 2.300±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.394±0.00 6.324±0.00
ENST00000548868 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548921 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549848 N/A N/A N/A N/A 1.205±0.00 1.692±0.00 N/A N/A 2.118±0.00 0.570±0.00 N/A 5.854±1.87 1.844±0.00 N/A
ENST00000610561 N/A N/A N/A 3.536±0.00 N/A 0.774±0.00 N/A 1.661±0.00 1.904±0.00 1.834±0.00 2.414±0.00 1.636±0.09 2.576±0.00 1.840±0.04
ENSG00000163328 ENST00000295500 N/A N/A 0.634±0.00 N/A N/A N/A N/A 0.822±0.00 N/A 0.800±0.00 N/A 0.677±0.30 0.481±0.00 N/A
ENST00000392551 N/A N/A N/A N/A N/A N/A 0.580±0.12 N/A N/A N/A 0.380±0.00 0.436±0.00 N/A N/A
ENST00000392552 0.953±0.00 0.864±0.00 1.734±0.00 4.412±0.94 0.495±0.00 1.353±0.90 1.559±0.94 1.759±0.00 0.902±0.58 0.726±0.49 0.413±0.26 0.925±0.69 0.794±0.15 1.174±0.00
ENST00000459996 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497620 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000614352 N/A N/A N/A N/A N/A N/A N/A N/A 0.116±0.00 N/A N/A 0.612±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000008226 ENSMUST00000090811 2.828±0.89 2.211±0.67 5.306±0.92 N/A 3.902±1.41 1.436±0.72 3.184±0.22 6.405±1.70 10.564±2.38 3.266±0.89 16.625±0.86 2.775±1.25 3.272±1.23 1.533±0.01
ENSMUST00000112050 3.260±1.10 3.264±0.51 3.406±0.39 N/A 1.647±0.61 1.649±0.20 1.379±0.00 3.860±0.61 7.723±2.61 3.112±0.37 N/A 2.757±1.16 4.487±2.22 N/A
ENSMUST00000123621 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139926 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154158 N/A N/A N/A 23.476±0.00 N/A N/A N/A N/A N/A N/A N/A 23.273±0.00 17.833±7.12 N/A
ENSMUST00000155019 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000041762 ENSMUST00000048504 1.066±0.00 N/A N/A N/A 1.458±0.00 N/A 0.689±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000076463 1.758±0.43 0.603±0.16 1.830±0.05 2.120±0.40 2.074±0.56 0.395±0.12 1.752±0.26 1.449±0.23 2.917±1.42 5.263±0.55 2.724±0.39 1.728±0.59 1.787±1.52 0.167±0.15
ENSMUST00000112043 N/A N/A N/A 1.445±0.00 0.920±0.00 N/A N/A N/A N/A N/A 0.863±0.00 1.842±0.00 0.298±0.00 N/A
ENSMUST00000112044 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.071±0.00
ENSMUST00000129184 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131430 3.037±0.00 1.688±0.18 N/A 33.246±0.00 4.104±0.00 0.768±0.14 3.129±0.40 2.901±0.69 5.554±0.34 5.709±0.12 N/A 5.165±3.94 2.199±1.52 1.072±0.65
ENSMUST00000134595 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000184503 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000041777 ENSMUST00000058615 2.474±0.26 1.148±0.00 8.835±0.31 6.740±2.84 1.808±0.60 1.135±0.24 1.889±0.33 2.976±0.50 9.559±5.59 2.908±0.62 4.527±0.40 2.950±3.20 4.487±1.55 11.326±4.61
ENSMUST00000136519 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.047±0.00 7.043±0.00 72.848±0.00
ENSMUSG00000086546 ENSMUST00000138573 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.913±0.31

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