C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: secernin 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000090811 Scrn3-001 ENSMUSG00000008226 10090 + 2:73312601-73337818 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000090811
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000090811 2.828±0.89 2.211±0.67 5.306±0.92 3.902±1.41 1.436±0.72 3.184±0.22 6.405±1.70 10.564±2.38 3.266±0.89 16.625±0.86 2.775±1.25 3.272±1.23 1.533±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008JW CIL_0008JW_0002 VISTA 2:72839371-73441413
CIL_0008K1 CIL_0008K1_0002 VISTA 2:72842671-73444272
CIL_0008S8 CIL_0008S8_0002 VISTA 2:72879758-73480791
CIL_00096H CIL_00096H_0002 VISTA 2:72968418-73569496
CIL_0008GI CIL_0008GI_0002 VISTA 2:72975594-73577184
CIL_0008K2 CIL_0008K2_0002 VISTA 2:72979567-73580473
CIL_0001HA CIL_0001HA_0002 CGP 2:73271925-73312701
CIL_0003IH CIL_0003IH_0003 CGP 2:73283105-73337818
CIL_00063Z CIL_00063Z_0003 CGP 2:73312601-73386572

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0006508 IEA proteolysis
GO:0008150 ND biological_process
GO:0016805 IEA dipeptidase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000272732 SCRN3-001 protein_coding Homo_sapiens 0 1267
ENST00000409673 SCRN3-006 protein_coding Homo_sapiens 0 1162
ENST00000424069 SCRN3-009 protein_coding Homo_sapiens 0 407
ENST00000427038 SCRN3-004 protein_coding Homo_sapiens 0 477
ENST00000437944 SCRN3-008 nonsense_mediated_decay Homo_sapiens 0 658
ENST00000458563 SCRN3-003 protein_coding Homo_sapiens 0 725
ENST00000475928 SCRN3-010 processed_transcript Homo_sapiens 0 291
ENST00000490927 SCRN3-007 processed_transcript Homo_sapiens 0 918
ENST00000548031 SCRN3-013 protein_coding Homo_sapiens 0 710
ENST00000548868 SCRN3-011 nonsense_mediated_decay Homo_sapiens 0 671
ENST00000548921 SCRN3-012 processed_transcript Homo_sapiens 0 479
ENST00000549848 SCRN3-014 processed_transcript Homo_sapiens 0 481
ENST00000610561 SCRN3-201 protein_coding Homo_sapiens 0 1267

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