C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PRP31 pre-mRNA processing factor 31 homolog (yeast)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000008373 Prpf31 10090 + 7:3629985-3642486 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000008517 Prpf31-001 3629985-3642486 protein_coding
  ENSMUST00000108636 Prpf31-004 3630557-3641229 protein_coding
  ENSMUST00000125782 Prpf31-003 3630059-3637057 retained_intron
  ENSMUST00000134047 Prpf31-005 3636095-3637057 retained_intron
  ENSMUST00000143231 Prpf31-002 3629992-3631421 retained_intron
  ENSMUST00000179769 Prpf31-201 3629985-3642485 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000008517ENSMUST00000108636ENSMUST00000134047ENSMUST00000143231
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000008517 2.179±0.46 2.105±0.32 3.641±0.26 4.183±1.76 1.685±0.79 2.800±0.86 0.864±0.06 1.337±0.41 4.849±5.29 2.108±1.11 0.898±0.23 4.984±1.46 4.823±2.07 3.614±0.67
ENSMUST00000108636 7.808±1.71 10.170±4.02 8.308±0.64 7.732±0.25 6.351±1.97 6.008±1.88 2.875±1.06 4.824±1.25 10.286±9.80 5.651±1.65 4.744±0.54 12.901±3.03 21.045±9.52 6.126±1.03
ENSMUST00000134047 N/A 14.547±5.45 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143231 N/A N/A 7.796±0.52 7.442±0.14 3.109±0.00 N/A 4.792±0.43 N/A N/A N/A 4.209±0.68 6.685±0.39 N/A 2.449±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005O3 CIL_0005O3_0002 CGP 7:3620324-3642486
CIL_0005OD CIL_0005OD_0002 CGP 7:3629985-3661108

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000244 ISA spliceosomal tri-snRNP complex assembly
GO:0000398 ISA mRNA splicing, via spliceosome
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005681 IEA spliceosomal complex
GO:0005687 IEA U4 snRNP
GO:0015030 ISA Cajal body
GO:0016607 ISA nuclear speck
GO:0043021 ISA ribonucleoprotein complex binding
GO:0044822 IEA poly(A) RNA binding
GO:0046540 ISA U4/U6 x U5 tri-snRNP complex
GO:0070990 IEA snRNP binding
GO:0071339 ISS MLL1 complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000095904 prpf31 PRP31 pre-mRNA processing factor 31 homolog (yeast) protein_coding Danio_rerio
ENSG00000105618 PRPF31 pre-mRNA processing factor 31 protein_coding Homo_sapiens

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