C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: pre-mRNA processing factor 31
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000105618 PRPF31 9606 + 19:54115410-54131719 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000321030 PRPF31-001 54115457-54131709 protein_coding
  ENST00000391755 PRPF31-003 54118271-54131709 protein_coding
  ENST00000419967 PRPF31-201 54115410-54131719 protein_coding
  ENST00000445124 PRPF31-006 54115779-54124630 protein_coding
  ENST00000445811 PRPF31-005 54115754-54124654 protein_coding
  ENST00000447810 PRPF31-009 54115809-54124583 protein_coding
  ENST00000466404 PRPF31-004 54118409-54131709 retained_intron
  ENST00000467851 PRPF31-010 54118406-54118811 retained_intron
  ENST00000498612 PRPF31-008 54118613-54128197 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000321030ENST00000391755ENST00000419967ENST00000445124ENST00000498612
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000321030 7.768±0.00 N/A 2.426±0.00 9.719±4.49 4.901±0.00 4.077±0.00 0.852±0.00 5.650±0.00 6.844±0.00 1.148±0.00 N/A 8.919±3.88 16.784±3.31 N/A
ENST00000391755 19.904±0.00 37.081±0.00 N/A 21.225±0.00 13.804±10.44 20.998±0.00 7.551±6.61 13.068±11.00 15.972±0.00 9.786±8.30 10.283±0.00 26.247±10.90 24.664±3.01 24.034±0.00
ENST00000419967 N/A 14.634±0.00 N/A 2.471±0.00 N/A 7.519±5.25 0.630±0.00 N/A N/A 1.719±0.00 7.988±0.00 N/A N/A 10.795±1.17
ENST00000445124 N/A N/A N/A N/A N/A N/A N/A N/A 3.815±0.00 N/A N/A N/A N/A N/A
ENST00000498612 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 16.159±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005NN CIL_0005NN_0001 CGP 19:54102728-54115675
CIL_0005O3 CIL_0005O3_0001 CGP 19:54107013-54131719
CIL_0005OD CIL_0005OD_0001 CGP 19:54115410-54155681

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000244 IEA:IDA spliceosomal tri-snRNP complex assembly
GO:0000398 IDA mRNA splicing, via spliceosome
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005684 IC U2-type spliceosomal complex
GO:0005687 IDA U4 snRNP
GO:0005690 TAS U4atac snRNP
GO:0015030 IDA Cajal body
GO:0016607 IDA nuclear speck
GO:0043021 IDA ribonucleoprotein complex binding
GO:0044822 IDA poly(A) RNA binding
GO:0046540 IEA:IDA U4/U6 x U5 tri-snRNP complex
GO:0070990 IPI snRNP binding
GO:0071339 IDA MLL1 complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000095904 prpf31 PRP31 pre-mRNA processing factor 31 homolog (yeast) protein_coding Danio_rerio
ENSMUSG00000008373 Prpf31 PRP31 pre-mRNA processing factor 31 homolog (yeast) protein_coding Mus_musculus

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